Oryzias melastigma (Indian medaka): 112136966
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Entry
112136966 CDS
T07439
Symbol
rorca
Name
(RefSeq) RAR-related orphan receptor C a isoform X1
KO
K08533
RAR-related orphan receptor beta
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112136966 (rorca)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
oml03310
]
112136966 (rorca)
Transcription factors [BR:
oml03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
112136966 (rorca)
Nuclear receptors [BR:
oml03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
112136966 (rorca)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
112136966
NCBI-ProteinID:
XP_024114805
Ensembl:
ENSOMEG00000005766
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Position
LG4:complement(4533322..4561816)
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AA seq
491 aa
AA seq
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MHDDVYNALVGMFVVGSLDAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAM
YSCSRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHRQS
QECAGAGAREENADMPDYGRSCRRGSSTTLSDLDDITKLPDGLLFDLPLTPGEPGGEYCN
LDMLDGSAGSSSSSQSSPEQTNLDFVDGNQSIKHEYQLLHDSGLFSHAILNPVPDGCSLL
EIERITQNVVKSHIETSQFSTEELRRLAWTFYNPEETRSYIGRSAEMMWQKCAVQITNAI
QYIVEFAKRISGFMDLCQNDQIILLKAGCMDVLLIRMCRAYNPINNTLFFDGKFASAQLF
KALGCDDLVSAIFELAKSLSRIQMTEEEMALFSAAVLLSPDRPWLTDVPKVQKLQEKVYV
ALQRCLQNKGASEEKLAKMVSKLPLMRSICNLHIDKLEFFRLVHPDTAYSFPPLYREVFG
SEIAFPDSTEG
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgcatgatgatgtgtacaatgctctggttggaatgtttgtggtgggaagcctggatgct
caaatagaagtaatcccgtgtaaaatctgtggggacaagtcttcagggattcactatggt
gtcatcacctgtgagggctgtaagggcttctttcggcgcagtcagcagaacaacgccatg
tactcctgctcccggcaaaggaactgcctcattgaccggaccaaccggaaccgatgccag
cactgcaggctgcagaagtgtctggctctgggcatgagtcgcgatgctgtgaagtttggc
cgcatgtccaaaaagcagcgagacagtctgtatgctgaggtccagaaacaccggcagtcc
caggagtgtgccggggccggcgcacgcgaggagaacgccgatatgccggactacggccgc
agctgcagaagaggctccagcaccacgctcagcgacctggatgacatcaccaagctgcca
gatggcctcctttttgacctgcccctgaccccgggggaaccaggaggagaatactgcaac
ctggacatgctggacgggagcgccggcagcagctcttcctcccaaagctcaccagagcag
accaacttggactttgtcgatggaaaccaaagcatcaaacacgagtaccagctgctgcac
gattctggactcttctcacacgcgatcctcaatccggtaccagacggatgctccctgctg
gagatcgaacgcataacacagaacgtggtgaagtcccacattgaaacgagtcagtttagc
acggaggagctgaggagattggcctggaccttctacaaccccgaggagacgcgctcgtac
atcggcaggtccgctgagatgatgtggcagaaatgtgccgttcagatcaccaacgcgatc
cagtacatcgtggagtttgccaagcgcatatctggatttatggatctttgtcagaacgat
cagattatcctcctgaaagcaggctgcatggacgtcctcctgatccggatgtgtcgggcc
tacaaccccatcaacaacaccttgttcttcgacgggaagtttgccagcgcgcagctgttc
aaagctctgggctgcgacgacctggtgagcgccatcttcgagctggcgaagagtctgagc
cgcattcagatgacggaggaggagatggctctgttcagcgcggcggtgctcctctcaccc
gaccggccgtggttgactgacgtcccgaaggttcagaagctgcaggagaaggtctacgtg
gctcttcagcgctgcctgcagaacaaaggcgcgtctgaggagaagctggcaaagatggtc
tccaagctgcccctgatgaggtccatttgcaacctccacattgacaaactggagtttttc
cgcctggtccaccctgacaccgcctacagcttcccccccctgtacagggaggttttcggc
agcgagatcgcctttccagactccacggagggctag
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