Oryzias melastigma (Indian medaka): 112137207
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Entry
112137207 CDS
T07439
Name
(RefSeq) RNA exonuclease 5 isoform X2
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
112137207
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
oml03009
]
112137207
Ribosome biogenesis [BR:
oml03009
]
Eukaryotic type
Pre-60S particles
RNases
112137207
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RNase_T
TSKS
Motif
Other DBs
NCBI-GeneID:
112137207
NCBI-ProteinID:
XP_024115151
Ensembl:
ENSOMEG00000019491
LinkDB
All DBs
Position
LG1:10993575..11034551
Genome browser
AA seq
789 aa
AA seq
DB search
MESSSSIQCSSKKRQIQTPAAQKMVKRPKTELEEDVMQPGPPPASPRVSVRSHHLQQPLS
LSQLAELIHFAALGKSAGLQQPSWCRLRHHKKVTGVNIVIVEGVTQNLFYKNYLMMKHLR
TSYSTRMTFASPPNNVASGIFSSEVPKVDLISAPRPNDKLKKALKNHPVVTKFGMEKKGL
TAYLLTQEERIKSHYPVKGFVGFEDFLCTDSVDCVSDCSPLYGLDCEMCLTEKGYELTRV
SLVDSCGKCIMDELVKPQNRVLNYLTKFSGITAAMLRPITTTLREVQHKLRELLPGDAVL
VGHSLNNDLAALKVIHPHVIDTSLLYKRELGQKFKLKVLAETILDKKIQTEEREGHDPIE
DAAAALELAQYFIERGPCQVVELHLEDLWGYKLEEEPPDCTSILTPSFRFADVLQTLGRS
VTFLGKRADISLDLSHQQWFISDKEMLASFKRQTKKPFLSVLQFSSFLDHMKRCFPDQQQ
LHRSVCAHLRGMCVVFAGPFPAGFSEKKVKRLFGRCGAVRRIQMLNTSVRVHAEVEYELL
EGAVLALRTLNGLNVKGQPIKVQRPLSESTLDLDLHLDALEGDPLSSRVLYAVLSRSTST
QLNGHSLNGKRLAAENGVSAAKINGQSPLMSEESVRDSFSRFGAVKSITVPEKSGKCAKH
AFIKFGSPEGKEAAVSSSEDLQQDNYLICPSLTPPHLVTWVAATTTSAEGTDEKILNICP
QETPTKPVEENQGTDVMMKKLDRQLGKVFRSLPDVTLSVVLLVGAGSMESEHPGLCLLEV
KQTKTKCFL
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atggaatcttcttcctcaatacaatgcagctcaaagaagagacagatccaaacccctgca
gcacaaaagatggtcaaaaggccaaagacggagctggaggaagatgtgatgcagcctgga
cctcctcctgcttcaccacgagtttcagtgcgatctcatcatctccagcaaccactctct
ctctctcagctggcagagctgatccattttgctgctctggggaaatcagccggcttgcag
cagcccagttggtgccgtctccgccatcataaaaaggtaacgggtgtaaacattgtgatc
gtggagggagtgacgcagaatctcttctataagaattacctcatgatgaagcatctcagg
acaagctattccactaggatgacttttgcatcaccgcctaacaatgtggcatctggaatc
tttagcagtgaagtacctaaagttgacctcatatcagctcccagaccaaatgataagctt
aaaaaagctctgaaaaatcatccagttgtcactaaatttgggatggagaagaaaggacta
acagcatatcttctaacccaggaggagaggataaaaagccactatcctgtcaaagggttt
gtaggttttgaggacttcttgtgcacagattcagtcgactgtgtctcagactgtagtcct
ctatatggactcgactgtgaaatgtgtctaacagaaaagggctacgagttgacccgcgtg
tctctagtggacagctgtgggaagtgcatcatggacgaactagtgaaaccgcagaaccgt
gtccttaattatctcacaaagttttctggcatcactgcagcaatgttgcgaccaatcaca
accactctgagggaggtgcagcataaactcagggagctgctgccgggggacgcagttctg
gtgggacattccttgaacaacgatctcgcggctctgaaggtcatccatccacatgtgatc
gacacctcgcttctctacaaacgagaactgggacagaaatttaagctgaaggttctggct
gagacgattctagataagaagattcaaaccgaagagagagaaggtcatgatcccattgag
gacgctgcagcggctctggaactggctcagtacttcatcgaaaggggaccatgtcaggtt
gttgagctccatctagaggatctttggggatacaagctggaggaagaacctcctgactgc
acttccatcctcacaccaagtttcaggtttgctgacgttctgcagactctgggtcgctca
gtaacctttttaggaaagcgagctgatattagtctggacctgtcccatcagcagtggttc
atctctgacaaagaaatgctggcgtctttcaaaagacaaaccaagaagccgttcctctcc
gtccttcagttttcctcgtttttggaccacatgaagagatgcttccctgaccagcagcag
ctgcaccggagtgtgtgcgcacaccttcgaggcatgtgtgtggtgtttgctgggccgttc
cccgcaggtttctctgagaagaaagtgaagcggctgtttggccgctgtggagcagttcgg
agaattcagatgctgaacacgagtgtcagagtccatgcagaggtggagtatgagctgctg
gagggagccgtgctcgctttaagaactttaaatggactgaatgtgaagggccagcccatt
aaggtgcagaggccgctgtctgagtccacgttagacctggatctacatcttgacgccctg
gagggcgatcctctgagttcccgtgttctctacgccgtcctgagtcggagcacgtccacg
cagctcaatggacatagtttaaatggcaaacgcttagcagcagaaaatggggtttcagct
gcaaaaatcaacgggcagtcgcccctcatgtctgaagagagtgtcagagattcgtttagt
cgctttggtgcggtgaagagcatcacggtgccggaaaaatctggaaaatgtgccaaacat
gccttcataaagtttggaagtccagagggcaaagaagcagctgtcagctcctctgaagat
ctacagcaagacaactacctaatttgcccatccttgactccgcctcatttagtcacatgg
gttgccgcgacaacaacatcagctgaaggcacagatgagaagatactcaacatttgccct
caggaaacacccacaaaacctgtggaggagaatcaaggaactgatgtcatgatgaagaag
ctggaccgccagctgggaaaagtgttccgatcgctcccagacgttaccctgtctgtagtc
ttactggttggagctggcagcatggagagtgaacatcctggtttgtgtttgctggaggtc
aaacaaacaaaaacaaagtgttttctttag
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