Oryzias melastigma (Indian medaka): 112137277
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Entry
112137277 CDS
T07439
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112137277 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oml03021
]
112137277 (taf5)
03036 Chromosome and associated proteins [BR:
oml03036
]
112137277 (taf5)
Transcription machinery [BR:
oml03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
112137277 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
112137277 (taf5)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
112137277 (taf5)
STAGA complex
112137277 (taf5)
TFTC complex
112137277 (taf5)
SAGA complex
112137277 (taf5)
SLIK complex
112137277 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_EML
WD40_MABP1-WDR62_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_SPT8
WD_LRWD1
Beta-prop_DCAF12
Beta-prop_Nup120_160
WD40_like
CDK5RAP3
eIF2A
VPS8_N
Beta-prop_WDR11_2nd
LisH_TPL
PROPPIN
RAB3GAP2_N
LisH_PAC1
Beta-prop_ELP1_1st
Urb2
Motif
Other DBs
NCBI-GeneID:
112137277
NCBI-ProteinID:
XP_024115279
Ensembl:
ENSOMEG00000011058
LinkDB
All DBs
Position
LG1:complement(6843949..6850006)
Genome browser
AA seq
748 aa
AA seq
DB search
MAAVQGGMVDEKEEVDIKTEPQSDGFVNTNATDGRQLSPSPGSSSSAGSSKTAAGAPEDQ
QTLLAVLQFLRKNKLTESVEILRREAGLPEDALDSKGVDCGAPGSGGSAGGVDGLDAGSL
LSRVTVSSSAGTPAPTKAAVADDQPDVSVVLSAYSQQGDPALYKVYYSDLKKFIESVLDC
HRAELSQVFYPLFVHMYLELVYNNHESEAKAFFQKFSGDQECYYEDDLRVLSSLTKKEHM
RGNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKSQ
IDAMSGSLAGEAKREANKAKVYYGLLKEPEIELPLDDEDEEAENEEGKPKKKKPKKDSMG
SKSKKQDPNAPSQNRIPLPELKDSDKLDKIMYMKEATKRIRLGPENLPSICFYTFLNAYQ
GLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRKVKSAADLNLIDKESDDVLERIMDEK
TASESKVLYGHSGPVYGISFSPDRNYLLSSSEDGTVRLWSLLTFTCLVGYKGHNYPVWDT
QFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVTCTRFHPNSNYVATGSSDRTI
RLWDVLTGNCVRIFTGHKGPIHTLAFSPNGKFLASGATDGRVLLWDIGHGLMVSELKGHT
DTIYALRFSRDGEILASGSMDNTVRLWNAAKAFDDLETDDFTAATGHIHLQDNSPELLLG
TYMSKSTPVIHLHFTRRNLLLAAGSYAA
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtgcagggtggaatggtcgacgagaaggaagaagtcgacataaaaacagaa
ccgcagagcgacgggttcgtgaacacgaatgcgaccgacggccggcagctctctccttcc
ccgggctctagcagctcggctggaagcagcaaaactgcggctggggcgccggaggaccag
cagacgctgctggcggtcctacagttcctgaggaagaacaaactgactgagtccgtggaa
attctgcggcgcgaggcgggactgcccgaggatgcgctggactcaaagggggtggactgc
ggtgcgccgggctcgggcggcagcgcgggcggcgtggacggcctggatgcgggctccctg
ctcagccgggtgacggtctcatcctccgctggaactccggcgccaaccaaagcagcagtc
gcagacgatcagcctgacgtcagcgtggtgctgtcagcctatagccagcagggagaccca
gctctctacaaggtttactacagcgacctgaagaagttcatcgagtcggtgttggactgc
caccgggcagagctgtcgcaggtcttctacccactgtttgtccacatgtatctggagctg
gtgtacaacaatcatgaaagtgaggcgaaggctttctttcaaaagttcagcggagatcag
gagtgctactacgaagatgacctccgcgttttatccagccttaccaagaaagagcacatg
agaggcaacgagacgctgctggacttccgcaccagcaagttcgtcctgcgcatctcccgc
gactcctaccagctgctgaagaggcacctgcaggagcgccagaacaatcagatctggaac
atcatccaggagcacctgtatatcgacatcttcgacggcatgccccgcagcaagagccag
atcgacgccatgtcgggcagcttagcaggagaggcgaagcgggaggccaacaaggccaag
gtttattacgggctgctgaaagagccggagatcgaactgcctctggatgatgaggacgag
gaggcggagaacgaggagggcaagccgaagaagaagaagccaaaaaaagacagcatgggc
tccaagagcaagaagcaagaccccaacgctccgtcgcaaaacaggatacctcttccagag
ctgaaggactctgacaagctggacaagatcatgtatatgaaggaagccacaaagagaatc
cgactgggaccagaaaacctgccctccatctgcttctacaccttcctcaacgcgtaccag
ggtctgactgcggtggacttcacagacgactccagcctgatagcggggggctttgccgac
tccacggtgcgagtgtggagcgtgacgccaaaaaagctgcgcaaggtcaagtctgcagca
gacttgaatttgattgacaaagaatcagacgacgttctagagaggattatggatgagaag
acggccagcgagtcaaaggttctgtacggacacagcggcccggtgtacggcatcagcttc
agcccagacagaaactacctgctgtccagttctgaggatggcacggtcaggctgtggagt
ctcctcaccttcacttgtctagtgggctacaaaggccacaactaccccgtgtgggacacc
cagttctccccgtatgggtactactttgtctccgggggtcatgaccgggtggcccgactc
tgggcaacggatcactaccagcccctgcggatattcgccggtcacttggctgacgtcacc
tgcacccgcttccaccccaactccaactatgtggccacgggctcatctgaccgcaccatc
cggctctgggacgtcctgacagggaactgcgtccggatcttcactggtcataagggtccc
atccacactctggctttctctcctaacgggaagttcttggcctcgggtgcgaccgacggc
agagttcttctgtgggacattggccatgggttgatggtgtcagagctcaaaggtcacaca
gataccatctacgccctcaggttcagcagggatggagaaatcctggcctctggttcaatg
gacaacacggtccgcctgtggaacgcagcgaaggcgtttgatgatttagagaccgacgac
ttcacagctgccacgggacacatccacctgcaggacaactccccggagcttctgttgggg
acgtacatgagcaaatccacgcctgtgatccacctccacttcacccgcaggaacctgctt
ctggctgcaggctcgtatgctgcgtga
DBGET
integrated database retrieval system
