Oryzias melastigma (Indian medaka): 112137351
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Entry
112137351 CDS
T07439
Name
(RefSeq) E3 ubiquitin-protein ligase RBBP6 isoform X1
KO
K10624
E3 ubiquitin-protein ligase RBBP6 [EC:
2.3.2.27
]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oml04121
]
112137351
Enzymes [BR:
oml01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112137351
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
U-box type E3
112137351
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DWNN
U-box
zf-CCHC_2
zf-CCHC
zf-C3HC4_3
zf-C3HC4_2
zf-RING_2
zf-RING_UBOX
zf-C3HC4_4
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
112137351
NCBI-ProteinID:
XP_024115395
Ensembl:
ENSOMEG00000001913
LinkDB
All DBs
Position
LG1:12868325..12883253
Genome browser
AA seq
1961 aa
AA seq
DB search
MSCVHYKFSSKLEYNTVTFDGLHITLSELKRQIMARERLKATDCDLQITNAQTREEYTDD
EAHIPKHSSVIVRRTPIGGVKPAGRTFIVDRSDTSVVGSSRPTDSSPSLSLAQLAKTANL
VDANASEEDKIKAMMTQSNHDYDPANYSKKAIGPPPAHYTCYRCGKAGHYIRQCPLPVVQ
DKSVDGPKPVKISKGIPQSFMVKADPGTKGAMLTSTGEYAIPAIDAEAYALGKKERPPFV
PHEQSSSEDDTDPIPDELLCPICNDLMTDAVVIPCCGNSYCDECIRTALLDSEEHICFTC
KQSDVSPDNLIANKFLRQAVNNFKNETGYTKHGRKQVQQAVLPPPRPQLVRPLHSRQQDP
LLANISNPPSTSAPTTAPKMENPPVAPPSSFTPPTPSPPPVEAVSEEPNASPVPPPVSDH
LSPVHSSSQGEPPPPGEVDEVDPEPPVKQEPSGKSESQRYSLPVISHLPPSRLHHSSAPT
GHQSRHNQSHRGGGRHWNRNRGEQTSTHLQTPLPPVPAPQVYPSPLYPPPSQPYLPPYSS
GPGLIPPPIISYQPQPVFAPGPPVLNPPWVPPGAQPPLLPLPPSMAQPLLSKEDFYRPRH
HRQDKATSKLDEFTKDFHEELIKYRNAPKRRRPSYSRSRSYSRSPFSRSPYSRSRSRSRS
RSRSRSYSFSPSRSRSRSHGRSYTRSPYSRRNGRSYGRSRSRSRSRSRSFGYRRSGSPRS
PFRAWDGAEGAGPYRSRSRSPGGFRSRSPGGRRLPPRELLPYDLKGHSPTGHDRWERERY
RQWEKEYTDWYNKYYKDYDTQQPAMHHRSHSSRDGEREKMSSSRDYSPQGRGRRGRDERG
GPPHYFPASSSTGNKSSSKMMKSKKIKRKTGEEADASHHSLDRGDATPVRDEPMDEMSSQ
TKTPPISSKPPAGAAPSKASASKSTAMLSKPTTKSTSKAGSDKSKKEKGSKVKAKGKTES
VKVRSEGVKVKKKTAEGVITKKKDSSSSVVKPLKTTKVKPDDASSLTTKREKSKISVRST
AAKTPPLSSQNPPFPSLHEGSRSDHDLRGRRDPPQSLLSLPHQHGLPHLPRPMSPIDNRR
RMGEDCRSLLRPPGKLRRIDGLEAGVDVLSHSHLPHQLALHRLPAPSDRLSNLPPLQVSR
DLGRGDSDRATIRPLMDIPKPMRRIKLNRDLGRRGSTEATSLDRAPMGLERTTNSTLDRS
AASIVSEGNGVNPAGENGRKEPSASAERPLSRDRPGAAGDKRHSSDIDRDRLSASERDRE
RLSTLERDRERPSTSEKERDRPSTLERDRERPSTSERDRDRPSTSEKDRDRPSTLERDRE
RPSTSERDRDRPSTLERDRERPATSEKDRDRPSTSERDRDRPTLERDRERPSTSEKDRDR
SSTSERDRDRPSTSEKDRSSTSERDRDRPSASERDRDRSSTLERDREKLAAPERDRDRLS
ASGRDRERPFTSERERERPSGIERDQDKPVSDQDKASASERGRDRSTSDKERLVGSDKER
DKVSSTGLEKAAVDRDKEVEKSTKPDKKNSNSGSGGGRSVCLDKMTIGEKSAITRRLSDH
QERPGVSSKERGESSEKAAKSDRSTSSDRIERSGKPSAPVREGVKDRQQTSVKSKPRISR
KALLSHAVTSTRPSQEKKPNSEKELKSIASRPVKPPSSSPSSSPSGSPDLSPTNQEPLIQ
PPPRSKWEKEDDEEDGQEDVLPATIKEPSPIKHRSQVRELLPEAAKPIRSEYREVSREER
RGVGREDKKRKAVRDEGKGVRTAQTDSSKQVKAKGTKDEGRGAKEEKKSSTREEERRGER
EEGRGVTGKEERSLETRVGQEGSRGPEPRRQRLCSDLTRETDEAAFVPDYSEGEGSEAEG
GKSGGGSMSPSLSQVSASQPSRSPTMSNHSGSATTTADKKKKKHKKHKKHKKHKKHSSQD
KEGEPKAHKHKHKKKKHKKNKDKETEEDEKKMDNEEEVPPC
NT seq
5886 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgtgttcactataaattttcttccaaactggaatacaatactgtcacgttcgac
gggctgcacatcaccctcagcgagctgaaaaggcagattatggcccgcgagcgcctcaag
gccacagactgcgacctgcagatcaccaacgcgcagacgcgagaagagtacacggacgat
gaggcccacatccccaaacactcttcagtgattgtccgccgcactccaattggtggagtt
aagcctgctggcaggacgttcattgtagatcgttctgacacatctgtggttggatcttct
agacccacggattcttctccttctttgtctcttgcccagcttgccaagaccgctaatctg
gttgatgcaaatgcgtcagaggaggacaagattaaagccatgatgactcaatccaatcat
gattatgacccagcaaattactcaaagaaggcaatcggacccccacctgctcactatact
tgctatcgttgtggaaaggcggggcactacattcgccaatgccctttgcctgtggtgcaa
gacaaaagcgtggatggtcctaaaccagtaaaaatcagcaagggcatccctcagagcttc
atggtgaaagctgaccccggcaccaagggggccatgttgaccagcactggagaatacgcc
atacctgccattgatgcggaggcgtatgctctaggaaaaaaggagcgtcctcctttcgtt
ccacatgagcaatcgtcgtctgaggatgatactgacccaatccctgatgaactgctgtgc
cctatctgcaacgatctgatgacggacgctgtggttataccctgctgtggaaacagttat
tgtgatgaatgtatccgaactgcattgttggactcagaggagcacatctgcttcacatgc
aaacaatctgacgtttcccctgataatctgattgccaacaagtttcttcgacaggctgtg
aacaacttcaagaatgagacaggatataccaaacacgggcgcaaacaggtccagcaggcc
gtccttccccccccacgtcctcagttggtcaggcctcttcattcaaggcagcaggaccct
ctgctggctaacatctctaatccaccttcaaccagtgcccccacaacagctcccaaaatg
gaaaacccacccgttgctcccccttcttcgtttactcctccaactccaagcccacctcct
gtagaggcggtctctgaagagccaaacgcctctccggttcctccacctgtgtctgaccac
ctgtctccggtacactccagcagccagggagaaccacccccaccgggtgaggttgatgag
gttgatccagagcctccagtgaaacaagagccttcaggaaaatctgaatcacagagatac
agtttgccagtaattagtcacctcccaccttcaaggctacatcattcatcagcaccaaca
ggccatcagtcacgacacaatcagtcccacagaggtggaggcagacactggaatagaaac
agaggggagcagacttcaactcacctacaaacgcctctacctcctgtacctgctcctcaa
gtctatccatctcccctgtacccacccccatcacagccgtatctacctccctacagctct
gggcctggccttattccaccacccattatcagttaccagccccagccagtatttgcccct
ggccctccagtgctaaaccctccctgggtaccccctggtgctcagccccctcttcttcct
ttaccaccgtctatggcccagcctttgctttctaaggaggatttctacagaccaagacac
cacagacaggacaaagccacatccaaacttgatgagtttactaaagattttcatgaagag
cttatcaagtatagaaatgcaccaaaaagaagaagaccatcttactcaaggtccaggtca
tacagtcgctctccattcagccgttctccttattctcgctctagatcaagatctagatcc
agatcaagatccaggtcttactccttttcaccaagtcgatcacgttcccgttcccatggc
cgatcttacacacgttccccttattctagacgaaacggacgcagttatggacgctcgagg
tcaaggtcccgctctcgctcaaggtcctttggataccggcgctccggatcaccacgctct
ccctttcgagcctgggatggagctgaaggtgctggaccctaccggtcacggtcacgctcc
cccggtggcttccgaagccgcagtcctggtggacgaaggctgcccccccgagagttactt
ccttatgacctcaaagggcacagtcccacaggccacgatcgctgggaaagagagcggtac
cggcaatgggagaaggagtacacagactggtacaacaaatactacaaagactacgacacc
cagcagccagccatgcaccacaggagccacagcagcagagatggcgagagggagaaaatg
tcctcatcaagagattactcgcctcaagggaggggacgaagaggacgagatgagagaggg
ggtccccctcattatttcccagcgtcatcttcaacggggaacaagtccagctccaaaatg
atgaaatcaaagaaaataaaaaggaaaacgggggaggaagcggatgcatcgcatcactca
ctagacagaggtgatgccacgcctgtcagagatgagccaatggacgaaatgtcttcacaa
actaaaacgcctccaatctcatccaagcctcccgctggtgcagcaccttctaaagcttca
gcatctaaaagtacagccatgctttctaaacccaccaccaagtctacttccaaggctggg
tctgataaatcgaaaaaagagaagggttcaaaagttaaagctaaaggtaaaacagagagt
gtgaaggtgaggagcgaaggcgtgaaggtaaagaaaaagacagcagagggtgtgataaca
aaaaagaaggattcctcttcctctgtcgttaaaccgctgaagaccaccaaagtcaagcca
gatgatgcttccagtttgactactaaaagggagaagagcaaaatctctgtgcggtccact
gcagcaaagactcctccattgtcgtcccagaacccaccttttccttcacttcacgaaggc
tcaagatcagaccatgacctgcggggtaggagagatccccctcagagtcttctttccctc
ccacatcaacatggactcccacacctcccccgccctatgtcgccaattgataatcgaagg
aggatgggagaggattgtcgctctttactcagacctcctgggaagctgagaagaatagat
ggtttagaggctggagttgatgtcctctctcattcgcaccttccccatcagttggctctc
cacagacttccagccccctctgacagactgtccaatttacctcccctgcaagtgagtcgt
gatctgggccgtggtgattccgatcgagcaaccattagaccgttgatggacattccgaaa
ccaatgaggaggatcaagttgaacagggacctggggagaagaggtagcacagaagcaaca
tccttggacagagcgccaatgggtctagaaaggacaaccaactccactttggatcgttct
gctgcttctattgtttctgaaggaaacggagtcaatccagctggagaaaatggaagaaaa
gagccatcagcatctgcagaaagacccttgtccagagacagaccgggagctgcaggagac
aaacgccacagctcagacatagaccgagataggctttctgcttctgaaagagatcgagaa
agactgtccactttagaaagagatcgagagagaccttccacttctgaaaaagaacgtgat
agaccttccactttagaaagagatcgagagagaccttccacttcagagagggatcgggat
agaccttccacttctgaaaaagatcgtgatagaccttccactttagaaagagatcgagag
agaccttccacttcagagagggatcgggatagaccttccactttagaaagggatcgagag
agacctgccacttctgaaaaagatcgtgatagaccttccacttcagagagggatcgggat
agacctactttggaacgggatcgagagagaccttccacttcagaaaaagatagagataga
tcgtccacttcagaaagggatagagacagaccttctacttcagaaaaagacaggtcttcc
acttcagaaagagaccgagatagaccctctgcttccgaaagagatcgggataggtcttct
acactagaaagagatcgggaaaagctggctgcgccagaaagggatcgagatagactttct
gcttccggacgagatcgagaaagacctttcacttctgaaagggagcgagaacgaccctct
ggtatagaaagagatcaagacaaacctgtttcagatcaagataaagcttctgcttcagaa
agaggacgagatcgatccacttctgacaaagagcgacttgtggggtctgataaggaaaga
gacaaggtctctagcactggcttggagaaagcagcagtggaccgagacaaagaggtcgag
aagtcgacaaagccagataaaaagaactccaacagtggaagtggaggaggcaggtcggtc
tgtttggataagatgactatcggcgagaaatctgccataaccaggaggctatctgaccat
caggagagacctggtgtgtcctctaaggagagaggggagagctcagagaaagctgctaaa
tctgacaggagtacatccagcgacagaatagagaggagtggcaaaccatctgctcccgtc
agggaaggtgtgaaagatcgtcagcagacgtctgtgaagagtaaaccaaggatcagtcga
aaggctctgttgagccatgcggtcacttccaccaggccaagccaagaaaaaaagccgaac
tctgagaaggagctgaagagcatagcctccagaccagtaaagccgccctcatccagccct
tccagcagcccaagtggcagcccggaccttagcccgaccaaccaggagccgctcattcag
cctcctcctcgctctaagtgggagaaagaagatgatgaagaagacggccaggaagatgtt
ctccccgcaaccatcaaagagccttctcccataaagcacaggagtcaggtcagagagctg
ctccctgaagcagctaaacccatcaggagtgaataccgtgaggtttcaagggaggagagg
agaggagtgggaagggaggacaagaaaaggaaagcagtgagggatgagggtaaaggtgtc
cggactgcacaaactgactccagcaagcaagtcaaagccaaaggtaccaaggatgagggc
agaggggcaaaggaggagaagaaatcttcaacaagagaggaggaaagacgaggagaaaga
gaggaaggacgaggagtgacagggaaagaggagagatcattggagaccagagtaggacaa
gaggggagtcgcggcccagagcccaggcgacagcgcctatgctccgacctgacgcgggag
actgatgaagcggcctttgtgcccgattacagcgaaggcgagggctcagaggcggaggga
gggaagagcggcggcggcagcatgagcccctctctcagccaagtgtcagccagccagccg
tcccgcagccccaccatgagcaaccacagtggctcggccaccaccacagccgacaagaag
aaaaagaaacacaagaaacacaaaaaacacaagaagcacaaaaaacacagcagccaggac
aaggagggagagcccaaagcgcataaacacaaacacaagaaaaagaaacacaaaaagaac
aaagacaaagagacggaggaggatgaaaagaagatggacaacgaagaggaagttcctcca
tgctaa
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integrated database retrieval system
