Oryzias melastigma (Indian medaka): 112137382
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Entry
112137382 CDS
T07439
Name
(RefSeq) general transcription factor 3C polypeptide 1
KO
K15199
general transcription factor 3C polypeptide 1
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oml03021
]
112137382
Transcription machinery [BR:
oml03021
]
Eukaryotic type
RNA polymerase III system
Basal transcription factors
TFIIIC
112137382
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B-block_TFIIIC
Phage_tail_NK
Motif
Other DBs
NCBI-GeneID:
112137382
NCBI-ProteinID:
XP_024115457
LinkDB
All DBs
Position
LG1:complement(10952012..10979057)
Genome browser
AA seq
2118 aa
AA seq
DB search
MDALSIVADEVALEGLDGITIPTIWIRLGDVQPKFPLKLDAFTKEFIWKSLVNNRNLKFY
ELPQERPDVLLFNRFADTDSEICLETHVKFEDDFKNIYPVYIIPENKDGIQGSCLFFKER
KEVTKQIRSSSLAPLLSLEEASKKYGRKLVIVASQALRFRALIGAETDPDLKILNESYCL
LERVGRARWQGELQSNLHGRLFMADARKLHYLRKPLVKHDLITLQPFVKRLKSGQMQHTI
LLLLKRFHLNRRTKIDKIMEYASNFLQQFPGQFTTSDNFKQHLNLSEDLMRSLIKNLRAA
KMTEFFRCPLEDLDPEAGPCNSRNGRKVIVRCLRLVKPYSKKGITDVIEDDDDNDDEEDA
MPGGGELSIEGQVLERDLMSQAYHLVLSQGSKGIPQRDIASKMHFGRQESRMIIRKLERE
DLIKGFLVDEGRQRTTKYLSHKCVGVSDQVQRFAQEHERNKRLYSAANKSDDAPPAKKRM
RKSNRKDEEREGQSGGEDAATGRVDPKRGEASGMSTEEDATEQIKPEPSVMRLTPDDGAV
ASTSGSMTGVTADPVTPPKPDTAVVVMEQKFITQSTPEREPSTKDAKTHETYRGLKRKNL
IVEAVQNLKVIEGCFPLQKMIINEEKEDGINSKCCKKTINRLIQSMSKQGLLKIYSTTVI
QEGITKKVDLIVHPSIQPNDEKITKVIDQIRFNISNTFYVIRKHETSEKGNKRSTFKDLL
KDKSLKKRRSGGEAAYQPKKVRGMAKSYGYQPKMCRLRVLHTFLWHVIYGHPLLNTPPDA
ECAAETTQLNESDLDGSNLKPEDNTETSGASSLYETLGEEEEELTNDQLNPESDMKVYMD
EESWKRFVPPVHLQKGFRRGWAMVGDLLLCMPLSIFVQILHMNFKVDGLEGYLSDPVKQH
YLVRMLPYRMKRQLFYRRQYMHSFNESLQKLIYMGLLQFGVGKKFMERDQVFVYLKRNAT
IVDTTNTEPHYWLVTEPPDKPFERRRYTFNTIEDVDSFWFDLMCICLNTPLGIIRKRRKG
SEEEAHVDEFRKVQDRKVFLKLAHLLRGSFEVCDDGSIPGDGRGAGGLDSEFFSHLKRNW
FWTNRLLLCKARPSSQEETEIKMRLQNFVNKPLTAAVKAAGTISPQGLTLKRSLNTDKVK
VGVEPASRNQRVIGGKGQKRNRLKKEIVKVPLKKKIQAKRRSDAHDEADHKALKKMTKQR
VYWSAAEDALVMLCSVASYLLNSKLQRPFVPYCVVRDMLHAEFKISEDKTSSAVARRSRC
ILKNPQTLLNYRICLAEAQQDKSLMKCLEEKKPANPDKAEDCAKVFSEYVKLLRQKFSSV
VSTHSITIPDSKQQLLSRFKVLAIDGGARMPLQDTITCTMDIHSIVLYNLIQSTLAMSNA
QMKSSRSFQTFHMYNKYDQDLLCQVFLQCRKRRLINRRRLQQTPYVRKNRGMPILPMSYQ
LSQSFYRWFSWRFPQSLCTDSFCFLRSLLTNKPGDERPAMTFYHETESRSRKGEELLERK
TKSAKKESRGEKKPQHPEPTNAQTSNEGEADERRAEEKEELKKADVNDEEDERISEHLES
QGSALTTGSDGVSLSGERVDDPPESSVDPAPNPPPDVSDMLQFSLSSPGGTCASALSLMT
LGLLNVHVSIPKPIVVVDSTMVDNDFVKSMAALEEEDDDEDDDGDNEKRKKLQITAHQAS
HTNYLMMQGYYSPGIAIRNISPNDNLVVESCSLKLQLRNTPAHRVFTEENVPSLDLTKCG
PSLLPPILTSNVCSPSCRIPSAEECDSLLIQEKGYTQQDIEACAQLRRSIDEAGEKGLDE
REMFSVFVHLLEPQTGRSKTLQLYLKDLQEKHQLVRVGCLGVRWVLMQHAEPWLLILNSQ
KPHSPSEKTPIFKNQHNIPFLRKRSSRGHHQEGLPSKKPASHLTKGPDTLNEDASGEKPH
EEEKREEQQEKSEGGEEQEVAQLEDEQEEVGKEETKKPEHQLSLPNTRKCRMKKLEDECS
PSSAKEEDALSFISRPWRLIDGSVNRSVCKGMLEGLLHHIMAQPGLTQQALLEHYRNVLQ
PVAALDLVQALVELGCVVKKTLVKDPKPSLFGSTTPQPRTKRSPAVEEPDEVYYEPTISC
CLRLSRVLPNERPWNDCL
NT seq
6357 nt
NT seq
+upstream
nt +downstream
nt
atggatgcgctgagtatcgttgcggatgaggttgccctggaagggctggatggaataacg
attcccaccatttggatacgtttgggggacgtacagcccaaattccccctgaaactcgac
gcttttaccaaagagtttatctggaagtcgcttgtaaataacagaaacctgaagttctat
gaacttccccaggagagaccagacgttctgttgtttaacaggtttgcagatactgactca
gagatttgtcttgaaactcacgtgaagtttgaggatgacttcaaaaacatctatcccgtc
tacatcatacctgaaaacaaggatggcatccagggctcatgcctttttttcaaagagagg
aaagaagttacaaagcagattcgctcctcgtctcttgcccctcttcttagcttggaggaa
gcttcaaaaaagtatggaagaaaactagtcattgtggcatctcaagctctgaggtttcga
gctctcatcggtgcagaaaccgatcctgatctaaagatcctcaatgagtcttactgcttg
ttggagcgagtgggccgagcacgctggcagggggaactgcagagcaatctgcacggccgc
cttttcatggcggatgctcggaagctgcactacttgaggaagcctcttgtcaaacatgac
ctgatcactctgcagccttttgtcaaacgtctgaaatcaggacagatgcaacacaccatt
cttctgctgctcaagcgctttcatctaaacagacggactaagattgataagatcatggag
tatgcctccaactttctccagcagttccctggtcagttcaccacatccgacaactttaag
caacatcttaatctgagcgaagaccttatgagaagcttgataaagaacctaagagctgca
aagatgacagaatttttccgctgccctctggaagacttggatcccgaagctggaccctgc
aacagcagaaacggaagaaaagttatagtgcgctgcttgagattggttaagccctactca
aagaaaggcatcacagatgtcatcgaggatgacgatgacaacgatgatgaagaggatgcc
atgcctggaggaggcgagctttccatcgagggtcaagtgttggagagagacctaatgtca
caggcctaccaccttgttttgtcccagggttcaaaggggatccctcagcgggacatcgca
tcaaaaatgcactttgggagacaggagtctcgaatgattattcggaagctggaaagggag
gacttaatcaagggttttttggtggatgaaggtcgacaaaggaccacaaaatatctgagc
cacaagtgtgtgggtgtcagtgaccaagtccagaggtttgctcaagaacatgaaagaaat
aagcggctctactctgcggcaaacaaaagcgacgatgctcccccggccaagaaaagaatg
agaaaaagcaatagaaaagacgaggagcgggaaggtcagagtggaggagaggacgctgcg
actgggagagtagacccaaagaggggagaagcgtcaggaatgtcaacagaggaagatgcg
acagagcagataaagccagagccttccgtcatgcggcttacaccagacgatggtgcggta
gcttccactagtggatccatgaccggtgtgacagctgaccccgtgacccctcctaaacct
gacacagctgtagttgtcatggagcagaagttcattactcaaagcacccctgagagagaa
ccgtccactaaagatgctaagacgcacgagacttaccgggggctgaagaggaaaaactta
atcgtggaggctgtccaaaacttaaaagttatagagggttgtttcccactgcagaagatg
atcattaatgaagaaaaggaggatgggatcaactctaagtgttgcaaaaagaccattaat
cgcctcatacagagtatgtcaaaacagggcctactgaagatatactcaaccactgttata
caggagggaatcacaaagaaagttgaccttattgtccatccatctattcagcccaacgat
gagaaaataaccaaagtcatcgatcagatccgattcaacatctccaacaccttctatgtc
atacggaaacatgaaacttcagagaaaggcaacaaacgaagcacattcaaggatctactc
aaagacaagagcttaaaaaaacggaggagtggtggagaggcagcgtaccaaccaaaaaaa
gtgcgtggaatggctaaaagttatggctaccagcctaagatgtgccgtctgcgcgttctt
cataccttcctctggcacgtgatttacggacacccgctcctgaacaccccccctgatgca
gaatgtgccgcagaaacgacgcagctaaacgaatccgacctcgacggttccaacctgaag
cccgaagacaacacggaaacctctggagcttcaagtttgtatgagaccttaggggaggaa
gaagaggaactgacaaatgatcagttaaacccagagtccgacatgaaagtgtacatggac
gaagagtcatggaagaggtttgttcctcctgtccatctccaaaagggtttccgcagaggc
tgggcgatggttggtgacctgctcctctgcatgccgctctcgatcttcgttcagatattg
catatgaatttcaaggtggacggactggaaggatatctgagcgatcctgtgaagcagcat
tatctcgtcagaatgctgccctataggatgaaaagacagcttttttataggcggcaatac
atgcactccttcaatgagtccctgcaaaagttgatttacatgggcctgctgcagtttggg
gttggaaaaaagttcatggagcgagaccaggtttttgtgtacctgaagcgcaatgctact
atcgttgacaccaccaacacagaacctcactactggctggtcacagaaccgccggacaaa
cccttcgagaggcgccgctacaccttcaacaccatagaggatgtagacagcttttggttt
gacctgatgtgcatctgcctcaatacgcctttaggaatcattcgtaaaagaagaaaggga
tcggaagaggaagcccatgtggatgagttccgcaaggtgcaagaccgcaaagtgtttctc
aaactggcacatctgctgcgtggcagttttgaagtgtgcgacgacggttccataccaggc
gatggcagaggagctggaggcctggactccgaattcttcagtcatttgaagcgaaactgg
ttctggacgaatcgtctgcttttgtgcaaagcgaggccaagtagtcaagaggaaacggag
atcaagatgaggctgcagaactttgtgaataaaccactcacagctgctgtcaaagctgca
ggaacaatttcacctcagggtttgactctgaagcggtccctgaacacagacaaagtcaaa
gtcggggttgaaccagcgtccagaaaccagagagtgattggaggaaaaggacagaaaagg
aaccggttaaaaaaggaaatcgtcaaggttccgttgaagaagaaaatccaggccaaaagg
cgctcagatgctcacgatgaagcggaccacaaggctttgaagaagatgaccaaacaaaga
gtgtactggtctgcggcggaggatgcactggttatgctctgctctgtggcgtcctacctc
cttaacagcaagttacaaaggccgtttgtgccgtactgtgtggtgagagacatgctgcat
gcagagtttaagatctccgaggacaaaacctccagtgccgtcgcccgccgctcccgatgt
attcttaaaaatcctcagacgcttctcaactacaggatctgtctggctgaggctcagcag
gataaaagtttgatgaaatgcttggaagagaagaaacccgctaaccctgacaaagcagag
gattgtgccaaagtgttctcagaatacgttaaactcctcaggcagaagttcagctctgtc
gtgagcacccacagcatcaccattcccgactccaagcagcagcttctctctcggtttaag
gtcctggcaatagacggtggagcacgcatgccgctccaagacaccatcacctgcacaatg
gacattcattctatagttctatacaacctgatccagagcactctggctatgagcaacgcc
cagatgaagtcctccagatcctttcagacgtttcacatgtacaacaaatacgaccaggac
ctgctgtgtcaagtgttcctccagtgcaggaaaagacgtctgatcaaccgccgccgcctc
cagcagactccctacgtgaggaaaaaccgaggcatgcccattctgcccatgtcctaccag
ctgtcccagtccttctacaggtggttttcttggcgctttcctcagtcactctgcaccgat
tccttctgcttcttaaggagtctacttaccaacaaacctggagatgagaggcctgccatg
accttctaccatgagacggaaagtaggtctcgaaagggggaggaactgttggaaagaaag
acaaaatcggctaaaaaagaaagtcgtggggagaaaaagcctcaacatccagagcctaca
aacgctcagacctccaatgaaggagaagccgatgaaagaagagcagaggaaaaggaggaa
ctgaagaaggcagatgtgaacgatgaggaggacgagcgcatttcagaacatctggaaagt
caaggtagtgcgctcacaactggatcggatggtgtttcgttgagcggcgagcgggtagac
gatccgcccgaatcgtcagtcgatcctgcccctaatcctcccccagatgtgtcagacatg
ctgcagttctcgctcagctctccagggggaacctgtgcctctgctctcagcttgatgact
ctggggctcctgaacgtgcacgtttccatccccaaacccattgtggtggttgacagcaca
atggtggacaacgattttgtaaagagtatggctgcattggaagaagaagatgatgacgaa
gatgatgatggtgacaatgaaaagagaaaaaagctccagattacagcccatcaggcgtca
cacaccaactacctgatgatgcaggggtactactcccctggtatcgctatacgtaacata
agccccaacgataacttggtggtggagtcttgctctctaaagctacagctgcgcaacact
ccggctcaccgtgtcttcacagaggagaatgttccttcactcgacctcactaaatgtggg
ccctccctactaccccccatcctcaccagcaacgtctgctccccttcctgccggataccg
agcgccgaggagtgcgacagcctgctgatccaggagaaagggtacactcagcaggacatt
gaagcgtgcgcccaactcaggagaagcatagatgaagccggggaaaagggtttggatgaa
cgagagatgttcagtgttttcgtgcacctgctggagccacagacgggacgctccaaaacc
ctacagctttatctgaaggatttacaggagaaacaccagctggtcagagtgggatgtctg
ggtgtgaggtgggtgctgatgcagcacgctgaaccatggctgctcattctgaactcccag
aagccccactcaccctcagagaagacccccatttttaagaaccagcacaacatccccttc
ctccgtaaaagaagcagcagaggacaccatcaggagggactgccttcaaaaaagccagca
tcacacctaacaaaaggaccggacacactgaacgaggacgcttcaggagagaaaccccac
gaagaagagaaacgggaggaacagcaggagaagtctgaggggggtgaggagcaggaagta
gctcagcttgaagatgaacaggaagaggtaggaaaggaggaaacgaagaagccggagcat
cagttgagtctgccaaacaccagaaagtgcaggatgaaaaaactggaagatgaatgttct
ccatcatcagctaaggaagaagatgccctgagcttcatcagccgaccgtggcgcctaatt
gacggcagcgtgaaccgatccgtgtgtaagggcatgctggaaggtcttctccaccacatc
atggctcagccaggactcacacaacaagctctgctggagcattataggaatgtgctgcag
ccggtcgcagcgctcgaccttgtacaggcacttgtggagttaggctgtgtggtgaagaaa
acgttggtcaaagaccccaaaccttcactgtttggcagtactacaccccagccaagaacg
aaaaggtctccagcggttgaagaaccagacgaggtgtactatgagcccaccatcagctgc
tgcctgagactgagtcgggtgttgcccaatgaacgcccctggaatgactgtctttaa
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integrated database retrieval system
