Oryzias melastigma (Indian medaka): 112137405
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Entry
112137405 CDS
T07439
Symbol
rfx1b
Name
(RefSeq) MHC class II regulatory factor RFX1 isoform X1
KO
K09173
regulatory factor X 1/2/3
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112137405 (rfx1b)
Transcription factors [BR:
oml03000
]
Eukaryotic type
Other basic domains
RF-X
112137405 (rfx1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BCD_RFX
RFX_DNA_binding
RFX1_trans_act
Adeno_hexon_C
Motif
Other DBs
NCBI-GeneID:
112137405
NCBI-ProteinID:
XP_024115492
Ensembl:
ENSOMEG00000013316
LinkDB
All DBs
Position
LG1:complement(7665804..7680960)
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AA seq
835 aa
AA seq
DB search
MATCSYSDDLQPQQVDAVTIATPATTTPSSAKTTHFLSEVLPTSGAISATIQSATISKTR
QDALCSQAAPTQARSQKAVVLATPTQPYVNREVQHSVVQKSNGQSSPSQYIIVTVTESSA
RSNDSLSDSSQSAPHVPPQAVQPLQPPQQRSVLQAASQPAKRIQMSNLQSVHVSQEVEHV
YSGQVQYVDGAGDSSFPASTIRSSSYPFSDPVIFPQTSPTSSSNFYETTPSPGSDMSGSV
TAQPIAVATAGAGGGAAAGGGEYALSVGYVIGGEAVAGGGSQSYGSPNSRAPPATVQWLC
ENYEGAEGVSLPRCTLYYHYLLHCQEQKLEPVNAASFGKLIRSVFVGLRTRRLGTRGNSK
YHYYGLRIKSGSPLLRLMDEQQHMAMRQQPFSQKSRIKPVQKAPGISNGISGGLGQLPPG
APGDISTQVQQYQQFLETSRSLPEFVDIDLQGHTLPDGIQLEHLKVFQDLYREHCEAVLD
VMINLQFNVVEMLWKSFWRFSESNNPESPDQPNDSENCLPKSLLVLLCKFEPVLLWTKRC
DNLLYQALVDALIPDVLRPIPSALTQAIRNFAKSLESWLTGAMMNIPEEMVRIKVVCISS
FSQTLRRYTSLNHLAQAARAVLQNSAQINQMLSDLNRVDFSNVQEQASWVCQCEDDVVRR
LEQDFKATLQQHNSLEQWASWLDSVVSQVLKPYEQNPTALSKAAKVFLLNWSFYSSMVIR
DLTLRSAASFGSFHLIRLLYDEYMYFLVEHRVAQAKGETPVAVMAEFSSSTKSRSSPDLD
KEEEDEEEEEESEEESAEMVLPSSSLGVCEEPPPAKQARTSLSLHTLTDSHSSVH
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggcaacttgtagttactctgatgacctgcagcctcagcaggttgatgctgtaaccata
gcaacacctgccaccaccacaccctcatctgcaaagaccacacatttcctgtctgaggtc
ttgccaacttctggagccatttctgccactatccagtcggccaccatctcaaagaccaga
caggatgcactttgttctcaagctgcacccacacaggcccgcagccaaaaggcagtcgtg
ttggcaactcccacacagccgtacgtgaaccgggaagtccagcactctgtggtccagaaa
agcaacgggcagagcagcccgtctcagtacatcatagtaacagttacagagagctccgct
cgctccaacgacagtctgtcggactctagccagtcggccccccatgttccgccgcaggct
gtccaacctctgcaaccgccccagcagaggtcagtgctgcaggcggcgtcacagccagcc
aagaggattcagatgagcaacctgcagtcggtgcatgttagccaggaggtggagcatgtg
tattctggtcaggtgcagtatgtggatggagcaggagattcgtcgttccccgcctccacc
attcggtccagcagctaccctttctccgacccggtcatcttccctcagaccagtcccact
tcctcttccaacttttatgagaccacgcccagtccagggtcagacatgagcggctctgtg
accgcacagcctattgctgtggcaacagccggagccggtggtggtgctgctgcaggtgga
ggggagtatgcgctatccgtaggctacgtaataggaggtgaagcagtagccggcggagga
agtcagagttacggcagccccaactctcgagccccacctgctactgtccaatggctgtgt
gaaaactatgagggggccgagggcgtcagtttaccccgctgcaccctctattaccactac
ctgctgcactgccaggagcagaagctggaacccgtcaacgctgcttcctttgggaaactc
atcagatcagtctttgtgggactgcggacccggagactggggaccagaggaaactccaag
taccactactatggcctgaggatcaaatctggctctcctctgctcagactgatggacgag
cagcagcacatggccatgaggcagcagccgttctcacagaagagcaggatcaaacccgtt
cagaaagctccagggatctccaatgggatctcaggtgggctaggccagctaccgccagga
gcacctggagatatttccactcaggtgcagcagtaccagcagttcctagagacctccagg
tctttaccagagtttgtggacattgatctgcaaggtcacactttgccagacgggatccag
ttggagcacctgaaggtctttcaggatctgtacagagagcactgcgaggctgttctggac
gtcatgatcaacctgcagttcaacgtcgtggagatgctctggaaatccttctggaggttt
agcgagagcaacaatccagaatcacctgaccagcccaacgattctgagaactgtttgccc
aaatccttgctggtgctgctctgcaagtttgagcctgtgctactctggaccaagcggtgt
gacaacctgctgtaccaggcgctggtggacgccctcatccctgacgtgctcagacctatc
cccagtgccttaacccaggccatacgcaactttgccaagagtctggagagttggctgact
ggagccatgatgaacatcccggaggagatggttcgcatcaaggtggtgtgcatcagctcc
ttctcccagacgctgcggcgctacaccagcctgaaccacctggcccaggctgcccgggcc
gtcctccagaactcggctcagatcaaccaaatgctctctgacctcaacagagtcgacttc
agtaatgtgcaggagcaggcgtcctgggtgtgtcagtgtgaggacgacgtggtgcggcgt
ctggagcaggacttcaaagccacgctgcagcagcacaactctctggaacagtgggcctcc
tggttggactccgtggtgtctcaggtcctgaagccctacgagcagaaccctactgctctg
tccaaagctgccaaagtttttctgctgaactggtcattctacagctccatggtcatcagg
gacctgactctacgcagcgctgctagctttggctcctttcacctgatccggttgctgtac
gacgagtacatgtacttcctggtggagcaccgggtggcccaggccaaaggagagacgccc
gtcgctgtgatggcagagttttccagctctactaagagccggagctccccggatctggat
aaagaagaggaggacgaggaggaggaggaggagagcgaggaggagagcgcagagatggtg
ctgccatccagctccctcggagtgtgtgaggagccgcctccagccaagcaggccaggacg
agtctaagtctgcacacgctcaccgactcccacagctccgtgcactag
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