Oryzias melastigma (Indian medaka): 112137440
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Entry
112137440 CDS
T07439
Name
(RefSeq) E3 ubiquitin-protein ligase SMURF2 isoform X1
KO
K04678
E3 ubiquitin ligase SMURF1/2 [EC:
2.3.2.26
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04120
Ubiquitin mediated proteolysis
oml04137
Mitophagy - animal
oml04144
Endocytosis
oml04340
Hedgehog signaling pathway
oml04350
TGF-beta signaling pathway
oml04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112137440
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
112137440
04350 TGF-beta signaling pathway
112137440
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
112137440
04137 Mitophagy - animal
112137440
09144 Cellular community - eukaryotes
04520 Adherens junction
112137440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oml04131
]
112137440
04121 Ubiquitin system [BR:
oml04121
]
112137440
03029 Mitochondrial biogenesis [BR:
oml03029
]
112137440
Enzymes [BR:
oml01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
112137440
Membrane trafficking [BR:
oml04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
112137440
Autophagy
Mitophagy
Other mitophagy associated proteins
112137440
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
HECT type E3
112137440
Mitochondrial biogenesis [BR:
oml03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
112137440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
C2
Motif
Other DBs
NCBI-GeneID:
112137440
NCBI-ProteinID:
XP_024115545
Ensembl:
ENSOMEG00000009207
LinkDB
All DBs
Position
LG1:3918807..3949995
Genome browser
AA seq
776 aa
AA seq
DB search
MSNQGVRRNGPVKVRLTVLCAKNLAKKDFFRLPDPFAKVVVDGSGQCHSTDTVRNTLDPK
WNQHYDLYIGKADSITISVWNHKKIHKKQGAGFLGCVRLLSNTINRLKDTGYQRLDLNKL
GPNDNDTVRGQIVVSLQSRDRIGTGGPVVDCSRLFDNDLPDGWEERRTTSGRIQYLNHIT
RTTQWERPTRPASEYSSPSGRPSSCVVDENTPVMTPVNGAVASCPPGEQRVQERRVRSQR
HRNYMSRTHLHTPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNVNCEELG
PLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLSANLHLVLNSPSPNGSRVAIDSQNTNL
SNQPQMKDQGGPVGPPQALSPAQLPEEAECLTVPKYKRDLVQKLKILRQELSQHQPQAGH
CRIEVSREEIFEESYRQVMKMRPKDLWKRLMIKFRGEEGLDYGGVAREWLYLLSHEMLNP
YYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIMGLAVFHGHYIDGGFTLPFYKQL
LGKPITLDDMESVDPDLHNSLVWILGNDITGVLDHTFCVEHNAYGEIIPHELKPNGKSIS
VTEETKKEYVRLYVNWRFLHGIEAQFLALQKGFNEVIPQHLLKAFDEKELELIVCGLGKI
DIVDWRSNTRLKHCTTESNIVKWFWRAVESFDEERRARLLQFVTGSSRVPLQGFKALQGA
AGPRLFTIHQIDANANNLPKAHTCFNRIDIPPYESYEKLYDKLLTAIEETCGFAVE
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaccaaggagtccggagaaatggcccagtaaaggtgcggttgacagtattgtgt
gcaaagaacctggcaaagaaagacttctttcggttgccagatccctttgccaaagtggta
gtggacggctcaggacaatgccactctacagacactgtgagaaacacgcttgacccaaag
tggaaccaacattatgatctttacattggaaaggcagactccatcaccatcagtgtgtgg
aaccataagaagattcacaaaaagcaaggcgcaggtttcctcggctgtgtccgcctcctg
tccaacacaatcaacagacttaaagacacaggctatcagagacttgatcttaataagctg
ggccccaatgacaacgatactgtgagaggacagatcgtagtaagtctacagtccagagat
cgcattgggactggaggacctgtggtggattgcagtcggctgtttgataacgacttacct
gatggttgggaggaaagacggacgacgtctggaaggatacagtaccttaaccacatcacc
cgcaccacccaatgggagagacctaccagacctgcgtcggagtactccagcccatcgggg
cgtccctccagctgtgtggttgatgagaacactccagtcatgacacctgttaatggggcc
gtggccagctgccctccaggcgaacaacgggtccaggagagacgggttcgatcacagcgg
catcggaactacatgagtcgtacgcatctgcatacgccacctgacctgcctgagggctat
gagcaaagaacaacccagcaaggccaagtctacttcctccatacccaaaccggagtcagc
acgtggcatgatcctcgggtgcccagggacttgagcaatgtgaactgtgaagagctgggc
ccgctgccaccaggctgggagatccgaaacacagccacaggccgggtctactttgttgat
cacaacaatcggacaacacagttcacagacccacggctgtctgcaaacctgcatctggtt
ctcaacagcccaagtccaaatggttcccgtgtggccatagacagccagaacactaacctc
agcaaccagcctcagatgaaagaccagggcggtcccgttggccctccccaggctctgtcc
ccagcccagctccccgaggaggcagaatgtctcacggttccaaaatacaagagagacctg
gtgcagaagttgaagatcctgagacaggagctgtcgcagcatcagccgcaggccggccac
tgccgcattgaggtcagccgggaagagatctttgaggaatcctatcgacaagtgatgaag
atgcggccaaaggatctttggaaaagactgatgatcaagttcagaggggaagaaggtcta
gattacggaggagttgcaagggagtggttgtatttgctgtcacatgaaatgctgaatccg
tactatggtctgttccaatactccagagatgacatctacaccctccagatcaacccggac
tctgctgtcaatcctgagcacctgtcctacttccactttgtgggtcgtatcatgggcctg
gctgtgtttcacggccactacatcgatggggggttcacactgcccttctacaaacagctg
ctgggaaaacccatcacgctggacgacatggagtctgtggaccccgacctccacaacagc
ctcgtctggattctaggaaacgacatcactggagtcctggaccacaccttctgtgtggaa
cacaacgcttacggggaaattatcccacacgagctcaagccgaacgggaagagcatctct
gtgaccgaggagaccaagaaggagtacgtcaggttgtacgtgaactggcgttttcttcac
ggcatcgaggctcagtttctggctctgcagaaaggtttcaacgaggtcatcccccagcac
ctgctcaaagctttcgatgagaaggagctggagctaatcgtgtgcggcctcggaaagatc
gacatcgtcgactggaggtccaacacccgtctgaaacactgcaccacggagagcaacatt
gtcaagtggttttggagagccgtggagtccttcgatgaagagaggagggctcggctgctg
cagtttgtaactggctcctctagagtgcccctgcaaggcttcaaggctttacaaggtgct
gcaggacccagactcttcacaattcatcagattgatgccaacgccaacaacctgcccaaa
gctcacacctgtttcaaccggatcgacattcccccctacgagagctacgagaaactctac
gacaagctactgacggccatcgaggagacgtgtggctttgcagtagaatga
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