Oryzias melastigma (Indian medaka): 112137495
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Entry
112137495 CDS
T07439
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112137495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112137495
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112137495
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112137495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5646
7tm_6
DUF4140
Motif
Other DBs
NCBI-GeneID:
112137495
NCBI-ProteinID:
XP_024115609
Ensembl:
ENSOMEG00000015557
LinkDB
All DBs
Position
LG11:11694991..11728628
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AA seq
901 aa
AA seq
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MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQRE
KEEVGTWLTNTIDTLNMQVDMFESEVESLSVQTRKKKGDKEKQDRIEELKKFIEKHRHHI
RMLETILRMLDNDSVPVEAIRKIKDDVEYYIDSSQDPDFEENEFLYDDLDLDDITQSLVA
TSPPGHSHLEDEIFQISSSTPTSTTSSSPIPPSPATFTTENSEDDKKRGRSTDSEVSQSP
VKNGNPSSSLSSSSSSSSSSSSASGLTSSSLVSVAGGGGGGHHSSSGGLLSNTSAGSYSN
ATQQPPHPSAQQQAKNSAPISNSSASTNSHCAPLASSPPSTCTLGALTSNSQTPPGPTLT
SNSLGLSLGLLGKGSSVTSSPMAGGLGLTGMPASLGNIGGLLSSSTPAPYAQAAASGTGS
SLPGSLGGVSTSLTQSGVGAVGSGSIAVGGPTSSSGGLLGTSPGVGSIGSGILGLSSAQS
GTQGSSLMSPNSLGGLAPGSGVGVIGSNGGSGSAGSVGGSSPLAVRPPSQQKPNCSTSYS
AVVADSTADSALNSASQSQSSQPSSLTSTTSQPKDTGPSLLSSMGLSSTSPSPASYNEAK
ITSSSSSSSLLNGPLSYSQSTDSIKPQPQEPLSSLKSMAERAAHEGDMASLHLPPDIFSS
STTAPPGAPTAPQSSLSEVSIPPSLGVCPLGPAPLSKDQLYQQPMQEAAWMHMPHPSDSE
RIRQYLMRNPCPTLPFHHQVPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALK
KQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDL
Q
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaaaggaaacttcaaggtgaaatagatcgatgtctaaaaaaagtagctgaa
ggagtggagcaatttgaagacatctggcaaaagcttcacaatgcagcaaatgccaaccag
aaggaaaaatatgaagcggacctcaaaaaagagattaaaaagctacagcgtcttcgagac
cagatcaagacgtgggtggcgtccaacgagatcaaagacaaaaggcagctagtagagaac
cgcaagctcatagagacgcaaatggagcggttcaaaatcgtggaacgagaaacgaagacg
aaggcgtactcgaaagaagggctcggcctcgcccagaaggtcgatccagcccagagggag
aaggaggaggtcggcacgtggttgacgaacacaatagacacgctaaacatgcaggtggac
atgttcgagagcgaagtggagtcgctgtcggtccagacgaggaaaaagaaaggagacaag
gagaagcaggaccggatcgaagagctgaagaagttcatcgagaagcatcggcaccacatc
cggatgctggaaaccatactgaggatgctggacaacgactcggtaccggttgaagccatc
cggaaaatcaaggatgatgtagagtactacatagattcctcgcaggatccagattttgag
gagaatgagttcctgtacgacgacctggatctggatgacattactcagtctttggtcgca
acatccccaccaggccactcgcacttagaggacgagatcttccagatctccagcagcacc
cccacctccaccacctcgtcctcacccattcctccatcacccgccactttcactacagaa
aactcagaagacgacaagaagagaggacgttcaacagacagtgaagttagtcagtcgcct
gtaaagaacggaaacccctcctcttcgttatcgtcttcctcctcctcctcgtcctcctct
tcttcagcctcgggactgacatcctcctcattggtgtccgttgctggaggaggcggcggg
ggtcaccacagcagctcagggggtctcctctccaacacttcggcaggcagctacagcaac
gccacccagcagcccccccacccgtcagcacagcagcaggccaaaaactcagcccccatc
tccaactccagcgcctccaccaacagccactgtgccccgttggcgtcctccccccccagc
acatgcacactgggggccctcacatcaaactcccagactccgcccgggcccacgctgacc
tccaacagcctcggtctcagtctgggcctcttggggaagggcagctcagtcacctccagc
cccatggcggggggcctcggcctaacagggatgccggcatcccttggcaacattgggggt
ctcctgtccagctccaccccagcgccatacgctcaggcagcagcttcaggcaccggcagc
tctttaccgggatctctggggggcgtcagcacctccctaacccaaagcggggtgggtgcc
gtcggcagtgggagcattgcagtcggcgggccgacgtcctcctcggggggtctactagga
acatctccaggagtgggtagcatcggctccgggattctaggtttgagttctgctcagtcg
ggaacgcagggctcttccttgatgtcgccaaactccctgggaggcttagctcctgggagc
ggcgtgggagtcatcgggagcaacggaggatcgggatcggcaggaagcgtgggtggaagt
tcgccgctcgctgttcgaccgccgagccagcagaagccgaactgtagcaccagttacagt
gctgtggtagcagacagcacagcagactccgccctcaacagtgccagccaatcacaaagc
agccagccctcatctctgacctccacaacaagtcagcctaaggacactggtcccagttta
ctgagctcgatgggtttgtcgtccacctctccgtcaccggcgtcttacaacgaggcaaaa
ataacatcgagcagcagcagcagcagtctgctgaacggaccgctgtcgtactcgcagtcc
actgacagcatcaagcctcagccccaggagcctctgagcagcctgaagtccatggctgag
cgagcggctcacgagggagacatggcctccctgcaccttcctccagacatcttctccagc
agcactacagcgccccccggcgccccgacagcacctcagtcctccctgtcagaggtcagc
atccccccgtcactgggggtgtgcccactgggaccagcccccctgtccaaagaccagctt
taccaacagcccatgcaggaggcggcgtggatgcacatgccccacccctccgactcggag
agaatcaggcagtacctgatgaggaacccctgccccaccctgcctttccaccaccaggtc
ccacccccccactccgacactgtggagttctaccagaggctctccacagaaacgctcttc
ttcatcttttactacctggagggcaccaaggcgcagtatctggcagccaaagccctgaag
aagcagtcgtggaggttccacaccaagtacatgatgtggtttcagcggcacgaggagccc
aagaccatcaccgatgagtttgaacagggaacctacatttacttcgactatgagaagtgg
gggcagcggaagaaggaaggattcacgttcgagtaccggtacctcgaagaccgagacctc
cagtga
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