Oryzias melastigma (Indian medaka): 112137584
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Entry
112137584 CDS
T07439
Name
(RefSeq) probable ATP-dependent RNA helicase DDX17
KO
K13178
ATP-dependent RNA helicase DDX17 [EC:
5.6.2.7
]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oml03041
]
112137584
Enzymes [BR:
oml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112137584
Spliceosome [BR:
oml03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
112137584
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
112137584
NCBI-ProteinID:
XP_024115747
Ensembl:
ENSOMEG00000009515
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All DBs
Position
LG1:complement(4006261..4016963)
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AA seq
648 aa
AA seq
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MRGGSSYGDRDRDRGRDRPRFGGGMGSRNGPPPMKFGNPGERLRKKRWNLDELPKFEKNF
YTEHPEVQHVSQFEVEEFRRKKEITIRGSGCPKPVTAFHQAHFPQYVMDVLMQQNFKEPT
AIQSQGFPVALSGKDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRE
LAQQVQQVAYEYGKSSRIKSTCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTN
LRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRQLAEDFLREYI
QINIGALELSANHNILQIVDVCMENEKDNKLIQLMEEIMAEKENKTIIFVETKKRCDDLT
RKMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATDVASRGLDVEDVKFVINYDY
PNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQARDLVRVLEEARQAINPKLLQLVDSG
RGGGGGGGRMRYRGSSSNNPNLMYQDECDRRMRSGGGGKDGRGGFGRDNRNNRDADRGSS
YRDRDRDNRNSFNSGAPDQYQSYNNSGGYNSRPGGPTGGGGGGQQQPNPPPGQFGQAPPP
ALPPQPLMAQPFVQPPQPPLMGFMGQQPYPFSSPPPPPGAPVPLPPQK
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgagaggagggtcctcttatggagacagggacagagatcgcggtcgagacaggccgcgg
tttggtggaggcatgggcagccgcaatggacccccacctatgaagtttggcaatccagga
gaacgcctgcgcaaaaaaagatggaacctggatgagctgcccaagtttgagaagaacttc
tacaccgaacacccagaggtgcagcacgtcagtcagtttgaggtggaggagttccgcagg
aagaaggagatcaccatcagaggctcgggctgtcccaaacccgtcacagcttttcatcaa
gcccattttccgcagtatgtgatggatgtgctgatgcagcaaaacttcaaggaacccacg
gcgatccaatcccagggtttccctgtggcgctgagtggcaaagatatggtgggaattgct
cagaccggctctgggaagacactggcttacctccttcctgctattgtccacatcaaccac
cagccctatctggaaagaggggatgggcctatatgtctggtgctcgctccaaccagagaa
ttggcccagcaggtccagcaggtggcttacgagtacggcaagtcgtcccgcatcaaaagc
acctgtgtctacggcggagccccaaaaggacctcagattcgagacctggagagaggtgtt
gaaatctgcatcgccacacctggccgtctcatcgacttcctggaggcggggaaaaccaac
ttacgccgctgcacctacttggtgctcgatgaggcagatcgcatgctggacatgggcttt
gagccacagattcgcaagatagtcgaacaaatcaggccggacagacagactctgatgtgg
agcgcaacgtggcctaaggaggtccggcagcttgctgaggacttcttgagggaatatatt
cagattaacatcggcgctctggagctcagcgccaaccacaacatcctacagattgtcgat
gtttgcatggagaatgaaaaggacaacaaactcattcagctgatggaggagatcatggct
gagaaggagaacaaaaccatcatctttgtggagacaaagaaacggtgtgacgatctcacc
cggaaaatgaggcgtgatggatggccagccatgtgcattcacggagacaaaagccaacca
gaaagagactgggtgctgacagagtttcggagcggcaaagcccccattctgatcgcgaca
gacgtggcctctcgggggctggatgtggaagacgtcaagtttgtcatcaactacgactat
cccaactcctccgaggactacgtccatcggatcggccgaacagcccgcagcaccaacaag
ggcacggcctacaccttcttcaccccgggaaacctgcgccaggcccgggaccttgtccgg
gttctggaggaggcccgccaagccatcaatcctaaactgcttcagctggtggactcaggc
cgtggaggaggagggggcggtgggaggatgcgttaccgcggcagcagctccaacaaccca
aatctgatgtaccaggacgagtgtgaccgccgcatgcgctccggcggagggggcaaggac
ggccgcggcggcttcggtcgggataaccgcaacaaccgggatgctgaccgcggctcgtct
tacagggaccgagaccgagataaccggaacagcttcaactcgggggctcccgatcagtat
cagagttacaacaacagtgggggttataactccaggcccggaggccccacagggggtgga
ggaggcggtcagcaacagcctaacccgccgccagggcagtttggccaggcccctcctccg
gccctcccccctcagcctctgatggctcagccgtttgtccaacccccacagcccccgctc
atgggcttcatggggcagcagccgtacccgttttcctccccgccgcctcccccaggcgct
ccggtccccctacccccacagaaatga
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