Oryzias melastigma (Indian medaka): 112137593
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Entry
112137593 CDS
T07439
Name
(RefSeq) LIM and calponin homology domains-containing protein 1 isoform X1
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
oml04990
]
112137593
Domain-containing proteins not elsewhere classified [BR:
oml04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
112137593
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
Motif
Other DBs
NCBI-GeneID:
112137593
NCBI-ProteinID:
XP_024115757
Ensembl:
ENSOMEG00000002927
LinkDB
All DBs
Position
LG1:14226088..14255635
Genome browser
AA seq
1773 aa
AA seq
DB search
MASPAACRTLSSAPQRAPLEPNHPEPACLEAQKWIEAVTGKSFGDKDFRSALENGILLCE
LLSAIKPGLVRKINRLPTPIAGLDNLTVFLRGCEELGLKGSQLFDPGDLQDTSIRANLKD
SDCNRKLKNVLNTVFWLGKAASGCAFYNGPTLNLKEFEGLLAQMRVDSDDGAISPQNPSV
RDSGYDCWDSERSESLSPPRHTRDNSLDSLDSFGSRSQHSPSPDVGNRGASDGRGSDSEA
DAPGRKPDVRKDDMLARRTASSESRSSIPFNQFLPNRNNATAYIPTPRRKQNAEEGEQRS
QVTPEQSKRAGLHHKTPKTVTWAPENNGEKSKQEEQMVTQEALEQRKLQKLEKAGIKVLP
AAVHHISAPTIKEKEASSEPPDIILRCENDFMNFCKSAWDSSSDGEEEREKRKVPDVRKD
DLASRRGRRGPATAKVHQFVPPPECTNKDIERWEGIRRASQQTLQDKDISVKEAIPDIIT
RRDNPFLKEKEEESDEGKEGSVEAVPNKQRDDLARRRAHSRPLSHRDAQMSFVTSPMSRA
DVQRWERLKMTEPSEDRPAPVCQACLEKNDGRPRGRPAKAGRGHSKVVTFGGVTEIKQPV
DTVMRGEWEENTLLRRLLSEATVAVPAIDLGSQLSERERSHIDGAEPDQGTLPLADALPW
TPEATPTVAELDARLALYEQRTEEEEEEEEERIPDLQKDDMMARRTGVFQKQSPASAAFS
RFLPLPGSKRCVQEEVNTNAALKFTVIEDKNLDLNVRAKHQSPAETSQQPHESAATTPLH
VDESEMDQAVPDLEKDDMMARKTRLFQKGSAFKTNQGFNQFLPVPGSAKYNASPVSAVKL
PQSKLVLRESFGSGVSVAAEHQIPFKEPVGPAHAGARGRDQEKGDTMGVTDTVVSKVTEP
PSSPALAAPAYSHSGVEEAEQEEERTEGKKGVNEKTLKKPFWLEDELPPFMVSRRVAFLS
NNESVSMTDMVNEEEAGHLPLLSQSRHEHMHEQYNNFLEEEDHWQDDLARWKSRRRSASQ
ELIRKEEERKRMEKMKEERRDGNKRKSIKTYKEIVEEKERREAELCEAYRNAASPEEAAL
VLQRYALRFTISDATLDSLKLPRSTSKPKDDLNDAAQEDKPASPLNGVEIIERLPKPDQT
PLNQKLTNPENTETDAIQEVEKSGATSSSSTTPSSPVSADTNSQIVPPQSPQFSEPMTQL
TESAATNQKDRISGDTLLQSKHTSVQDPQEQSQTMQLESAQSQSVQQQSSQLEPVQPQSV
QVESAQPLSVQVEPAQPQSVQQQSPQSQLAHHQSTQPQPEHLQPLQSPPVQSTHTLPSAA
PVRPVPLLVAKPYCQPRSMLKPVKMDGLVRVNGETTEDSVVSPPPSALLDSLQEKQENKD
VSSKPAEEDSSPEEAVENPKTAEQLTPPPQNDKTPASSASAISSLIGGRSCTITTTIVTE
LTQTLVEPLYPEIQNSTKAGSPVLFQTPIEEEKTEPAASPSNKQKYSPTVTEGLEESGVT
IETPMLNLAKRVNHWVWDPNEERKRLERWQQEQERLLQEQYQKEQEKLKKEWEKAQIEVE
EEERKHKEEERRILEETVTPLSPTGLLQQGSGHTAASAPAPQNNNRGEGNASLQPNGNKI
PTGREDQHASKLHFFQDSSCDGEPSKRPEPWKTASLDRNPQLNQTQNVKRSGSHDVVTGK
EQSTPSPPQPPSPSRCVSGKRLCSGCSKPLGKGAAMIIDTLGLYFHMGCFKCGVCKGQLG
DATAGTDVRIRNGLLSCHECYIASRGRGQPTTL
NT seq
5322 nt
NT seq
+upstream
nt +downstream
nt
atggctagtcccgccgcgtgcagaaccctctcaagtgccccgcagcgagcgccgctggag
ccgaaccatcccgaaccagcctgcctggaggcgcagaaatggatcgaggcggtaacaggg
aaaagctttggagacaaggacttccgcagtgcattggagaacggcatcctgttatgcgag
ctgctgagtgcaatcaaaccagggctagtcagaaagatcaacagactgcccacccccatc
gctggtctggacaacctgactgtgttcctgcgaggctgtgaggagttgggcctgaagggc
tcccaactttttgaccccggagacttgcaagacacgtcgatacgcgctaacctcaaggac
tctgactgtaaccgcaagcttaaaaatgtgctaaatacagttttctggcttgggaaagct
gcaagtggctgtgcgttctacaatggacccactctgaacctgaaagagtttgaaggactc
ctcgctcagatgagggtggacagtgatgatggcgcgatcagtcctcagaaccccagcgtc
agagacagtggctacgactgctgggactcagagaggagcgagtctctttctccccccaga
cacacaagggacaactctctggacagtctggattcttttggctctcgctcacagcacagc
ccttctccagatgtggggaaccgaggcgccagtgacgggcgaggcagcgactctgaagcc
gatgctcccggcaggaagccagatgttcggaaggatgacatgctggcgagacggactgcc
agcagtgaatccagaagttccattcccttcaaccagttccttcctaatcgaaacaacgcc
accgcttacatcccgacgccccggcgaaagcagaacgctgaagagggagaacagcgaagt
caagtcactccggagcaaagcaaaagagctgggctgcaccacaaaactcccaagactgtc
acttgggcacccgagaacaatggtgaaaaatcaaaacaggaagagcagatggttacccag
gaagctctggagcagaggaagttgcagaagttggagaaggcagggattaaagttcttcct
gctgctgttcaccacatcagcgctcccaccatcaaggaaaaagaagcgagttcagaaccg
ccggacatcatccttcggtgcgaaaacgactttatgaatttttgcaaatccgcatgggat
tcctcctctgacggggaggaggaaagagagaaacggaaagttccagatgttcgtaaagac
gatttggcttcccgacgaggtcgccgcggccccgcgacggccaaggtgcatcagtttgtc
cctccccctgaatgtacaaacaaagacatagagcgctgggagggcatcagacgagcctcc
cagcaaaccctgcaggataaagacatcagcgtaaaagaagcaatccccgacatcataact
cgcagggacaatcctttcctgaaagaaaaggaagaggagtcggatgaagggaaggaggga
agtgttgaggctgtcccgaataagcagagggacgacctggctcgcaggcgcgctcatagc
aggccgctgtcgcacagggacgcacagatgagctttgttacatctcccatgagccgagca
gatgtgcagaggtgggagaggctgaagatgacggaaccaagcgaggataggccggctcct
gtgtgtcaggcttgtctggagaaaaatgacggaaggccgcgcggcagaccagccaaggct
ggacgcggtcacagcaaagtcgttacctttgggggcgtgactgagatcaagcagcccgta
gacacagtcatgagaggtgaatgggaggagaacacgttgcttagacgactgctctccgag
gcaacagtagccgtgcccgccattgacctgggctcccagctctcagagcgggaacgcagc
catatagacggagcagaacccgatcaaggtaccctacctttggcggacgccctgccctgg
actcctgaggccacgcctactgtcgctgagctagatgctcgtctggctctgtatgagcaa
agaacagaggaggaagaggaggaggaggaggaaagaatcccagatcttcagaaagatgac
atgatggcgaggcggactggagttttccagaagcaaagtcctgcttcagcagcttttagt
cgcttcttgccgctgcctggctccaaacgctgcgtgcaagaggaggtcaacacgaacgcc
gctctaaagttcactgtaattgaagacaaaaacctggatttgaatgtcagagcgaaacat
caaagtcctgctgaaacatctcagcagcctcatgagtcagctgcgaccacgcctctccat
gtagacgagagcgagatggatcaggcagtgccagacctggagaaggatgacatgatggct
cgaaagaccagattattccaaaaagggagtgcatttaaaacaaatcagggcttcaatcag
ttcctgcccgtacccggatcagccaaatataacgccagtccagtatctgcagtgaagctg
ccacagagcaaactggtgctcagagaaagttttggcagcggcgtctctgtggcagcagaa
catcagatcccatttaaagagccggtcggccccgcgcatgccggggcgagggggcgagat
caagagaagggagacacaatgggggttactgacaccgtggtcagcaaagtgaccgagccc
ccctcttctcctgcactcgctgctcctgcttactcccatagcggggtggaggaggcagag
caggaggaggaaagaacggagggaaagaagggtgtgaatgagaaaacactaaagaaaccc
ttttggctggaagatgagctacctccattcatggtgagccgacgagttgcttttctgtca
aacaacgagagtgtgagtatgactgacatggtgaacgaggaagaggcgggacacttaccc
ttactgagccagtctcggcacgagcacatgcacgagcagtacaacaacttcctggaggag
gaggaccactggcaagatgacttggctcgctggaaaagtcgccgccgcagtgcttcacaa
gaactgatcaggaaagaggaggagaggaagaggatggagaagatgaaggaggaaagaaga
gatggaaataagaggaaaagcatcaagacgtacaaggagattgttgaggagaaagagcgc
agagaagccgagctttgtgaggcctacagaaacgcagcttctccagaggaggcagccttg
gttttacagcgttacgctcttcgcttcaccatcagcgacgcaacgctcgacagcctgaaa
ttgcccagatcgacctcaaaacccaaagacgacctaaatgacgcagcgcaggaagacaag
ccagcatcccctctgaatggcgtagagatcatagagcgcctgcctaaaccagatcagact
cctctaaaccagaaactcacaaacccggaaaacacggagacagatgctattcaggaagtg
gagaaatccggtgccacttccagcagctccacaacccccagcagtccagtttctgcagac
acaaactcacagattgttccacctcagtcgccacagtttagtgaaccaatgactcagctc
acagaatctgctgctacgaatcagaaagaccggatttcaggagatacgctgctccaaagc
aaacacacgtcggttcaggatccacaagagcagtcgcagacgatgcaacttgagtctgcg
cagtctcagtcagtgcagcagcagtcatcacagctggagccagtgcagcctcaatcagtg
caggtggagtcagcgcagcctttatcagtgcaggtggagccagcgcagcctcaatcagtg
cagcagcagtcacctcagtctcagttagcacatcatcagtcaacgcagcctcagccagag
cacctgcagccactgcagtctccaccggtgcagtctacacacaccctcccatcagctgca
cctgtcagacctgtccccctgctggtagccaagccctactgccagcccaggagcatgctc
aaacctgttaagatggacgggttggtgcgagtcaacggggagacgacagaggactccgtt
gtttcccctccaccttcggccctgctggactcactgcaggaaaaacaggaaaacaaagat
gtttcctccaaaccggcagaggaagacagctctcctgaggaagctgttgaaaatccaaag
accgcagagcagctgacgcctcccccgcaaaatgacaaaacgccggcgtcctcagcctct
gccatcagctctctgattggaggacgcagctgcaccatcaccaccaccatcgtgacagaa
ctcactcagactctggtggagccgctttacccagagatccaaaacagtacgaaggctgga
tcccctgtattgttccagactcccatagaggaggagaagactgagcctgctgcatcaccc
agcaataagcagaaatattctcccacggttacagaaggacttgaggagagcggtgtgacg
attgagacccccatgttgaacttggctaaacgtgttaatcactgggtctgggaccccaat
gaggagcgtaaacgtttggaaaggtggcagcaggaacaggaacgcctcctacaggaacaa
tatcagaaggagcaggagaagctgaagaaggagtgggagaaagcacagatagaagtggag
gaggaggagagaaaacacaaggaagaggagagacgcatcttagaagagactgtcacgccc
ctcagtcccacaggcctgttgcagcagggctcaggacacacagcggccagcgctccggca
ccacaaaacaataacagaggggaaggaaacgcgtccctgcagccaaacgggaacaaaatc
cccacaggcagggaagaccagcatgcatcaaagctccacttcttccaggattcttcatgt
gacggggagccttcaaagagaccagaaccgtggaaaactgcctccttggaccgcaaccca
caactgaaccagacccagaatgttaaaagatcaggatcgcatgatgttgtaacagggaaa
gagcagtccacaccgtcccctcctcagcctccctcacccagcaggtgtgtcagtggaaag
cggctgtgttctggttgttcgaaacccttggggaaaggagctgcgatgatcattgatact
ttgggcttgtatttccacatggggtgttttaagtgtggtgtgtgcaaaggacagctggga
gacgccactgcagggacggatgtaaggattcgtaatggactgctgagctgtcatgaatgc
tacattgcatcaaggggcagaggtcagcccacaaccctttga
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integrated database retrieval system
