Oryzias melastigma (Indian medaka): 112137605
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Entry
112137605 CDS
T07439
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112137605 (exosc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112137605 (exosc1)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
112137605 (exosc1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
112137605 (exosc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
112137605
NCBI-ProteinID:
XP_024115786
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All DBs
Position
LG1:7974524..7980387
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AA seq
195 aa
AA seq
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MSPTRLCVPGDKLCSVEDCIMGTGVYLRHGYIYSSLAGYVLRKNEGEELPVISVVRETEV
QLLPDVGAIVTCKVTSINSRFAKVHILYVGSTPLKDLFRGTIRKEDVRATEKDKVEMHRS
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSDAARAQMVPISWCEMQCPQTHTK
EFRKVARVQPEYLEA
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atgtctcccacgaggctgtgtgttccaggtgacaaactgtgcagcgtggaggactgcatt
atgggtaccggcgtctacctgcggcacggctacatctactcctctcttgcaggctacgtc
ctgaggaagaatgagggggaggagttacctgtgatctccgtggtcagagaaacggaagtc
cagctgctaccagatgtgggcgccattgtcacctgtaaggtgacgagcatcaactcccgg
ttcgccaaagtgcacatcctgtatgtgggttccacgccgctgaaggacctgttcagagga
accatcaggaaagaagacgttcgcgccacagagaaagacaaggtggagatgcacagaagt
ttcagacccggagacatcgttctggccaaggtgatttctctgggagatgtccagtccaac
tacctgctgaccacagcagagaacgagctcggagtggtggtggcccacagcgatgcagcc
cgagctcagatggttcccatcagctggtgtgagatgcagtgtccacagacacacaccaag
gagttccgcaaagtggctcgagtccagcccgagtatctggaggcgtga
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