KEGG   Oryzias melastigma (Indian medaka): 112137605
Entry
112137605         CDS       T07439                                 
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
  KO
K07573  exosome complex component CSL4
Organism
oml  Oryzias melastigma (Indian medaka)
Pathway
oml03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:oml00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    112137605 (exosc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oml03019]
    112137605 (exosc1)
Messenger RNA biogenesis [BR:oml03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     112137605 (exosc1)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     112137605 (exosc1)
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1
Other DBs
NCBI-GeneID: 112137605
NCBI-ProteinID: XP_024115786
LinkDB
Position
LG1:7974524..7980387
AA seq 195 aa
MSPTRLCVPGDKLCSVEDCIMGTGVYLRHGYIYSSLAGYVLRKNEGEELPVISVVRETEV
QLLPDVGAIVTCKVTSINSRFAKVHILYVGSTPLKDLFRGTIRKEDVRATEKDKVEMHRS
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSDAARAQMVPISWCEMQCPQTHTK
EFRKVARVQPEYLEA
NT seq 588 nt   +upstreamnt  +downstreamnt
atgtctcccacgaggctgtgtgttccaggtgacaaactgtgcagcgtggaggactgcatt
atgggtaccggcgtctacctgcggcacggctacatctactcctctcttgcaggctacgtc
ctgaggaagaatgagggggaggagttacctgtgatctccgtggtcagagaaacggaagtc
cagctgctaccagatgtgggcgccattgtcacctgtaaggtgacgagcatcaactcccgg
ttcgccaaagtgcacatcctgtatgtgggttccacgccgctgaaggacctgttcagagga
accatcaggaaagaagacgttcgcgccacagagaaagacaaggtggagatgcacagaagt
ttcagacccggagacatcgttctggccaaggtgatttctctgggagatgtccagtccaac
tacctgctgaccacagcagagaacgagctcggagtggtggtggcccacagcgatgcagcc
cgagctcagatggttcccatcagctggtgtgagatgcagtgtccacagacacacaccaag
gagttccgcaaagtggctcgagtccagcccgagtatctggaggcgtga

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