Oryzias melastigma (Indian medaka): 112137612
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Entry
112137612 CDS
T07439
Symbol
arpc1b
Name
(RefSeq) actin-related protein 2/3 complex subunit 1B
KO
K05757
actin related protein 2/3 complex, subunit 1A/1B
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04144
Endocytosis
oml04517
IgSF CAM signaling
oml04530
Tight junction
oml04810
Regulation of actin cytoskeleton
oml05100
Bacterial invasion of epithelial cells
oml05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
112137612 (arpc1b)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
112137612 (arpc1b)
09144 Cellular community - eukaryotes
04530 Tight junction
112137612 (arpc1b)
09142 Cell motility
04810 Regulation of actin cytoskeleton
112137612 (arpc1b)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
112137612 (arpc1b)
05100 Bacterial invasion of epithelial cells
112137612 (arpc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oml04131
]
112137612 (arpc1b)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
oml04812
]
112137612 (arpc1b)
Membrane trafficking [BR:
oml04131
]
Others
Actin-binding proteins
Arp2/3 complex
112137612 (arpc1b)
Cytoskeleton proteins [BR:
oml04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Arp2/3 complex
112137612 (arpc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_EML_2
Beta-prop_THOC3
WD40_WDHD1_1st
WD40
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40_CDC20-Fz
WD40_Prp19
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR35_TULP_N
Beta-prop_Aladin
WD40_Gbeta
Beta-prop_WDR19_1st
Beta-prop_WDR3_2nd
Beta-prop_HPS5
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_IFT122_1st
EIF3I
Beta-prop_WDR36-Utp21_2nd
eIF2A
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_2nd
RMC1_N
PEP5_VPS11_N
SH3_3
WDR90_beta-prop_4th
Beta-prop_NUP159_NUP214
WD40_MABP1-WDR62_2nd
Motif
Other DBs
NCBI-GeneID:
112137612
NCBI-ProteinID:
XP_024115795
Ensembl:
ENSOMEG00000021429
LinkDB
All DBs
Position
LG1:12106327..12111206
Genome browser
AA seq
381 aa
AA seq
DB search
MSYHSFLLEPISCHAWNKDRTQIALCPNNHEVHIYKKDGAKWTKIHELKEHNGQVTGIDW
APESNRIVTCGADRNAYVWTLKEGAWKPTLVILRINRAARCVKWSPKENKFAVGSGSRLI
SICYFEQENDWWVCKHIKKPIRSTILSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVEEKP
SATPWGSKMPFGEVMFESGGSGAQVQTSGGGGGGWVHCVCFSHSGNRLAWVSHDSTVSVA
EGGKTGTVNSLSSEALPLLCVTFITENSIVAAGHDCYPVLFVYDGAKGSLTFGGKLDVPK
QAAQKGISARERFQNLDRRASETQGTDKDLNTLHKNSISQISLLEGGRSKCTKFCTTGMD
GGMGIWDVKSLESAMKDLKIV
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtaccacagctttttgctggaaccaattagctgccacgcctggaacaaagatcga
acccagatcgcactgtgccccaacaaccatgaggtccacatctacaagaaagatggggcg
aagtggaccaaaatccacgagctgaaggaacacaacggacaggtgacagggatcgactgg
gccccagagagtaaccgtatagtcacctgtggagcagaccgcaatgcttacgtgtggacc
cttaaagagggggcctggaagcccaccttggtcatcctcaggatcaaccgtgctgctcgc
tgtgttaagtggtcgccaaaggagaacaagtttgctgtcggcagcggctcgcggctcatc
tccatctgctactttgagcaggaaaatgactggtgggtgtgcaagcacatcaagaagcca
atccgctctaccatcttgagcttggactggcatcccaataatgtgctgctggcagccgga
tcatgtgacttcaaatgcagggttttttccgcctacataaaggaggtggaggagaagccg
agcgccaccccctggggcagcaagatgccttttggggaggtgatgtttgagtctggaggg
tcaggagctcaggtccagacttcagggggaggaggaggcggttgggtgcattgtgtgtgt
ttctcgcactccggcaaccgtctggcctgggtttcccatgattccactgtgtccgtcgca
gagggaggcaagactggcacggtgaacagcctgagctcagaggcgcttcctctcctgtgt
gtgactttcatcactgagaacagcatagtagcagctggtcatgactgttacccggtgctg
tttgtgtacgatggcgccaaaggcagcctgacatttggcggtaagctggatgttccaaag
caagctgcccagaagggaatcagcgccagagagcgtttccagaacctggatcgccgagct
tcagagactcagggcactgacaaggacctcaacacgctccacaagaacagcatcagtcaa
atctctttgctggagggaggaagaagcaagtgcaccaagttctgcaccaccggcatggat
ggaggaatgggcatctgggatgtcaagtctctggagtcggctatgaaggacttgaagatc
gtgtga
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