Oryzias melastigma (Indian medaka): 112137640
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Entry
112137640 CDS
T07439
Symbol
lsm6
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm6
KO
K12625
U6 snRNA-associated Sm-like protein LSm6
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03018
RNA degradation
oml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112137640 (lsm6)
09123 Folding, sorting and degradation
03018 RNA degradation
112137640 (lsm6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112137640 (lsm6)
03041 Spliceosome [BR:
oml03041
]
112137640 (lsm6)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112137640 (lsm6)
mRNA degradation factors
5'-3' decay
Lsm complex
112137640 (lsm6)
Spliceosome [BR:
oml03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
112137640 (lsm6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
112137640
NCBI-ProteinID:
XP_024115829
Ensembl:
ENSOMEG00000000074
UniProt:
A0A3B3BBN8
LinkDB
All DBs
Position
LG1:complement(15274876..15278002)
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AA seq
80 aa
AA seq
DB search
MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAIEQTEEYVNGQLKNKY
GDAFLRGNNVLYISTQKRKV
NT seq
243 nt
NT seq
+upstream
nt +downstream
nt
atgagtttgagaaagcagacgccaagtgacttccttaagcagataattggtagaccagtg
gtggtcaaactcaactctggtgtggattacagaggtgttctggcctgtctggatggttac
atgaacatcgccattgaacagacagaagagtatgtcaatggacagctcaagaacaagtat
ggggatgcctttctgagaggaaacaatgttctgtacatcagcacccagaagaggaaggtg
taa
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integrated database retrieval system
