KEGG   Oryzias melastigma (Indian medaka): 112137907
Entry
112137907         CDS       T07439                                 
Symbol
col9a2
Name
(RefSeq) collagen alpha-2(IX) chain
  KO
K08131  collagen type IX alpha
Organism
oml  Oryzias melastigma (Indian medaka)
Pathway
oml04510  Focal adhesion
oml04512  ECM-receptor interaction
oml04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:oml00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    112137907 (col9a2)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    112137907 (col9a2)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    112137907 (col9a2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:oml00535]
    112137907 (col9a2)
Proteoglycans [BR:oml00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   112137907 (col9a2)
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 112137907
NCBI-ProteinID: XP_024116210
Ensembl: ENSOMEG00000019788
LinkDB
Position
LG11:6216832..6261276
AA seq 691 aa
MAALSAWLKAGVVLQTLCLALAQVMGPPGPQGLPGSPGPSGTPGSDGIDGEKGNPGSPGP
PGQKGEPGQPGPNGPPGENGIDGLIGAKGDRGPVGRPGPKGQPGPSGEPGAPGSGLPGLA
GALGPTGLPGKIGQTGPKGIMGPPGPPGLPGPPGKPGPPGKFIGLEEGSADIQCPLNCPA
GPKGPQGLQGVKGHKGRAGILGDPGSIGKLGPKGDVGISGEQGIPGVPGPIGLRGYPGMM
GPKGEAGPRGYKGIFGPIGIPGPPGEEGPQGPPGEPGEKGDKGSRGIQGSQGAVGKKGEN
GLPGIDGKDGTPGIPGIKGAPGQPGRPGPPGPQGTAGLPGASGAKGASGDKGEPGPRGHV
GLPGSPGPLGEPGIPGEAGMEGVPGPKGDRGQHGPTGPQGAVGKPGSKGERGPIGIPGAQ
GLTGTKGDKGFQGKIGPKGDIGDPGVEGLAGEKGEKGISGEPGPKGQQGVRGDLGHNGPT
GDPGKPGDPGPPGLPGPRGLHGERGVPGKPGIQGPLGRDASDQHIIEVVLKMLQERLAAV
AVSAKRAVLGGTGVMGPPGPPGPPGAPGPQGPHGLPGPRGIPGIFGAPGQIGNIGLKGKR
GPKGERGDPGKPHQGQPGPPGIQGPPGIDGVARDGRPGERGPQGSAGEPGYPGKAGPPGL
PGYCEAAMCLAASAYTSPRLQEAGTIKGPNV
NT seq 2076 nt   +upstreamnt  +downstreamnt
atggctgcgctctccgcatggctgaaggccggggtcgtcctgcagactttgtgtctggct
ctggctcaagtgatgggtccacctggaccccagggtctgccgggctcaccgggcccctcc
ggcactcccggctcggacggcatcgatggagaaaaaggaaaccctggatcccctggacct
ccaggacaaaagggggaaccgggccagcccggtccaaatgggccgccaggggagaacggc
attgatggtttgattggagctaaaggggatcggggtcctgttgggaggcccggcccaaag
ggtcagcccggtccgagcggtgagcctggagctccgggatccggccttccaggtctggct
ggagctctggggccaactggacttccaggtaaaattggacaaactggaccaaagggaatt
atgggaccacctggaccaccaggactccctggacctcctggaaagcctggtcccccgggc
aaattcattggattagaggagggcagtgcagacattcagtgccctctcaactgtccagct
ggtcctaaaggccctcaggggcttcaaggtgtcaagggacacaaaggccgtgccggaatt
ctcggcgacccaggcagcatcggaaaactgggccccaaaggggatgttggtatctctggg
gagcagggtatccctggtgtgccgggtccaattggactgagggggtatccaggaatgatg
ggtcccaaaggagaagcaggccctcgaggatacaagggcatattcggacctatagggatt
cctggacctcctggtgaagaaggacctcagggaccacctggagagccaggagagaaagga
gacaaaggcagcagaggcatccagggttctcagggtgcagttggtaaaaagggagaaaat
ggtcttcctggtattgatggaaaagatggcacacctggcattcccggaatcaaaggtgcc
cctggacaacctggaaggccgggtccacctggtcctcaaggaacagcgggattacctggc
gcctctggggcaaagggggcatctggagataagggagaacctggaccgaggggtcatgtt
ggcctgcctggttctccaggacctctgggagagcctggcattcctggggaggccggtatg
gaaggagttcctggacctaagggagacagaggccaacatggaccaactgggccacaggga
gcagttggaaagccgggaagcaaaggagaaagaggacccatcggtatcccgggagcacag
ggtcttactggaactaagggagacaagggtttccaaggcaaaattggtccaaagggggat
ataggcgatccaggtgttgagggattggctggggagaaaggagaaaagggtatctctggt
gaaccaggacccaaaggacagcaaggagtcagaggggatcttggacataatgggcccaca
ggagaccctggtaaaccaggtgacccgggacctccagggctgcccggacccagaggactg
catggagagcgtggggtacccggcaagccaggcattcagggaccattgggacgggatgca
tctgaccagcatattattgaagtggttttgaagatgctgcaggagagactagcagcagtg
gcggtgagtgcaaagagagccgtgctcggaggtacaggtgtaatgggacctcctggtccc
cctggaccacctggagcacccggtccgcagggaccgcatggcctaccgggaccccgtggc
atccctggtattttcggcgcacctgggcagatcggaaacataggactcaaagggaagaga
gggccaaagggagagaggggagatcctggaaaacctcaccaaggacagccaggacctcca
ggaattcaaggtcctcctggcattgatggtgtggcccgggatggaaggcccggtgaaaga
ggacctcaaggatcagcaggagagcccggttatcccggcaaggcaggtcctccagggctc
ccaggctactgtgaggcggctatgtgtctagccgcatcagcatacacctcaccccgacta
caggaggcgggaacgatcaaaggacccaatgtttag

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