Oryzias melastigma (Indian medaka): 112137975
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Entry
112137975 CDS
T07439
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112137975 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oml03041
]
112137975 (sf3b1)
03036 Chromosome and associated proteins [BR:
oml03036
]
112137975 (sf3b1)
Spliceosome [BR:
oml03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
112137975 (sf3b1)
Complex B
112137975 (sf3b1)
Complex C
U2 SnRNP specific factors
112137975 (sf3b1)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
112137975 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
GST_N_4
DUF2298
Motif
Other DBs
NCBI-GeneID:
112137975
NCBI-ProteinID:
XP_024116276
Ensembl:
ENSOMEG00000019231
LinkDB
All DBs
Position
LG21:14652943..14670039
Genome browser
AA seq
1315 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKASLKEQDGGQGVGLDSTGFYDQEIYGGSDSRFAGYVTS
IAANEQEDDDEDDTSTSLLGQKKPGYHAPVAMLNSIPQSDDHYDPFAEHRPQKIADREDE
YKARRRQMIISPERLDPFADGGKTPDPKLQVRSYVDVMLEQNLSKEEREIRQQLAEKAKS
GDLKVVNGSAASQAVAKRKRRWDQTADQTPSNSTPKKVSSWDQADASAETPGHTPAHTPS
NSRWDETPGRPKGSETPGATPSSRMWDPTPSHTPAGAATPGRDTPGHATPGHGGATGSVR
KNRWDETPKTERETPGHGSGWAETPRTDRGEESVGETPTPGASKRKSRWDLTPASQMGSS
TPLLTPGKTPLGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEELDAMFP
EGYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQVEDRTTKQMNDQPSGNLPFLKP
DDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAG
PLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYA
RVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLK
AVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAI
AALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREV
MLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRN
YRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLE
EQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQ
QAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKM
TPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAH
KKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVL
PALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAS
AVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVALGPCRMLQY
CLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAQYPQVYNDDKNVYVRYELEYVL
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacacacgaagatattgaggcacagatcctggagatccagggg
atgaaagcctccctcaaagagcaagatggaggtcagggagtgggcctggactccaccggc
ttttacgaccaggagatctatggaggcagtgatagtcgttttgccggatatgtcacttcc
atcgcagccaatgagcaggaagacgatgatgaagatgacacatcaacaagcttattgggg
cagaagaagccaggctaccatgcacccgtggcaatgctcaattccattccccagtcagat
gaccactacgacccatttgcagagcatcgtccgcagaaaatcgcggatcgggaagatgaa
tacaaagctcgtcgcagacagatgatcatttcacccgagcgccttgacccttttgcagat
gggggcaaaacgccagaccccaagctgcaggtgaggtcgtacgtagacgtcatgttggag
cagaacttgtcgaaagaggagagggagatccgtcagcagctggcagagaaggccaagtca
ggggacctgaaagtagtcaacgggtctgctgcctcccaggccgtggcaaaacgaaaacgc
cgctgggaccagacggccgaccaaaccccttccaattctacacccaagaaggtgtccagt
tgggaccaagctgatgccagtgctgagactccaggacacactcctgctcacacgccttca
aacagccgctgggatgagactcctggtcgtcctaaaggcagcgagacccctggagccacc
cccagctcccgtatgtgggaccccacccccagccacacccctgctggtgccgccacccct
ggcagagacactcctggccacgccacaccaggccacggaggagccactgggagtgttcgg
aagaaccgctgggacgaaactccaaagacagagagggagaccccggggcacgggagcggc
tgggctgaaaccccccgaacagacagaggagaagagtctgtgggggagacgccaacgcca
ggagctagcaagagaaagtctcggtgggatctaactcctgccagtcagatgggatcctcc
acccccctcctgaccccaggaaagaccccactaggaactccagccatgaacatggcgaca
ccaaccccaggacacctgatgagcatgacccccgagcagctgcaggcgtggaggtgggag
cgggaaatcgatgagaggaaccggccgctcacagacgaggagctggacgctatgttccct
gagggatacaaggttttgcctcctccagcaggatacgtgccgatccgcactccggcccgg
aaactttcagctacccccacccccatcggagggatgacgggatttcacatgcaggtggag
gaccgcaccaccaagcagatgaacgaccagccctcagggaacctgccattcctcaaaccc
gatgacatccagtactttgacaaactcctggtggaggtggacgaatccacactgagccct
gaagagcagaaggagaggaagatcatgaagctgctgcttaagatcaaaaacggaacacca
cccatgagaaaggcggctctgcgtcagatcacagataaagctcgtgaatttggagcagga
ccgctctttaaccagattttgccgctgctcatgtcgcccacactggaggaccaggagcgc
cacttgctggtcaaagtcatcgatcgcatcttatacaagctggatgacctggtgcgaccg
tacgttcataagatcctggtggtgatcgagcccctgctcatcgatgaagattattatgcc
agagttgaagggcgagagatcatctccaacctggccaaggctgcaggtttggccactatg
atctccaccatgaggcctgacatcgacaacatggacgaatacgtgagaaacacgacagcc
cgagccttcgccgtggtggcctcggctttgggaatcccctcgctcctgcccttcctcaaa
gctgtctgcaaaagcaagaagtcctggcaggcccggcacaccggcatcaagatcgtgcag
cagatcgccatcctcatgggctgcgccatcctgcctcacctgcgcagcctggtggagata
attgagcacggtctggtggatgagcagcagaaggtgaggaccatcagtgccctggctatt
gctgccctcgctgaagccgctaccccctacggtatcgagtccttcgactcggtgctgaag
ccactgtggaagggcatcaggcagcacagaggaaagggtctggctgcgttcctcaaagcc
attggttatctgatcccgctgatggatgctgagtatgccaactactacaccagagaggtg
atgctcatcctcatcagggagttccagtcccctgacgaggagatgaagaagattgtactg
aaggtggtgaaacagtgctgcggcacagatggcgtggaagcaaattacatcaagacagag
attttgccaccgttcttcaagcatttctggcagcacaggatggccctggacagacgcaac
tatagacagctggtggacaccactgtagagctggctaacaaagtgggggcagcagagatc
atctcgcgcatcgtggacgacctgaaagacgaggcggagcagtacaggaagatggtgatg
gagaccatcgagaagatcatgggtaatctgggtgcagctgacatcgaccacaagctggag
gagcagctgatcgatggcatcctgtacgccttccaggagcaaaccacagaggactcagtg
atgctgaatggttttggcaccgtggtgaacgcgctgggcaaacgtgtgaagccgtacctg
cctcagatctgtggtacagtgctgtggcgtctcaacaacaagtctgccaaagtgcggcag
caggcggcggacctgatctcacgcacagctgtggtcatgaagacctgtcaggaggagaag
ctgatgggccatctgggggtggtgttatacgagtacctgggagaggagtaccctgaggtt
ctgggcagcatcctgggggcactcaaggccatcgttaacgtcattggaatgcacaagatg
acccctcccattaaagaccttcttcctcgcttgacccctatcctgaagaaccggcatgag
aaggtccaggagaactgcattgacctggtgggccggatcgctgacaggggggcagagtac
gtgtcggccagggagtggatgaggatctgctttgagctgctggagctcctcaaggctcac
aaaaaggccatccgcagagccactgtcaacacctttggctacatcgccaaagccatcggc
cctcacgacgttttagccacactgctcaacaacctgaaagtgcaggagcgccagaaccgg
gtctgcaccaccgtggccattgccattgtggcagagacgtgctcgcccttcaccgtgctg
ccggcgctcatgaacgagtacagagtccctgagctgaacgtgcagaatggcgtcctcaag
tctctctccttcctgtttgagtacatcggagagatgggcaaagactacatctacgctgtc
acgccgctgctggaggacgcgctgatggacagggacctggtccacagacagacggccagc
gctgtggtccaacacatgtctctgggtgtgtacggtttcggctgcgaggactccctcaac
cacctgctgaactatgtgtggcccaacgtcttcgagacctcacctcacgtaatccaggca
gtgatgggggccctagaggggctccgggtggccctcggcccgtgccgcatgctgcagtac
tgcttacagggtctgttccatccagccagaaaggttcgagacgtctactggaagatctac
aactccatctacatcggctcccaggacgcccttattgcacagtatccgcaggtttacaac
gacgacaagaacgtgtacgtgcgctatgagttggagtacgtcctgtaa
DBGET
integrated database retrieval system
