KEGG   Oryzias melastigma (Indian medaka): 112138120
Entry
112138120         CDS       T07439                                 
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X2
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
oml  Oryzias melastigma (Indian medaka)
Pathway
oml03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:oml00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    112138120 (taf5l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:oml03021]
    112138120 (taf5l)
   03036 Chromosome and associated proteins [BR:oml03036]
    112138120 (taf5l)
Transcription machinery [BR:oml03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     112138120 (taf5l)
   Coactivators
    SAGA/TFTC/STAGA complex
     112138120 (taf5l)
Chromosome and associated proteins [BR:oml03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     112138120 (taf5l)
    STAGA complex
     112138120 (taf5l)
    TFTC complex
     112138120 (taf5l)
    SAGA complex
     112138120 (taf5l)
    SLIK complex
     112138120 (taf5l)
SSDB
Motif
Pfam: WD40 Beta-prop_WDR3_1st Beta-prop_WDR5 Beta-prop_THOC3 WD40_Prp19 Beta-prop_IFT122_1st WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 WD40_MABP1-WDR62_2nd TFIID_NTD2 EIF3I Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_SCAP DSE1_N WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_Aladin ANAPC4_WD40 NBCH_WD40 WDR90_beta-prop_4th CFAP251_N PAC11 Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_VPS8 Beta-prop_WDR41 Beta-prop_NOL10_N RMC1_N Beta-prop_HPS5 Beta-prop_SPT8 ASA1 Beta-prop_DCAF4 Beta-prop_Vps41 Beta-prop_EIPR1 Tricorn_2nd Beta-prop_WDR19_1st Nbas_N PROPPIN Beta-prop_IP5PC_F PEP5_VPS11_N WD40_like WD_LRWD1 BCAS3_WD40 PD40 AAA_3
Other DBs
NCBI-GeneID: 112138120
NCBI-ProteinID: XP_024116452
Ensembl: ENSOMEG00000014627
UniProt: A0A3B3C7W2
LinkDB
Position
Unknown
AA seq 591 aa
MKRVRTEQIQYAVTQYLKRRQYVDTDASLKGAKLSQSPEEMAASLTVQTESGCGNVVSAA
PCQADPQQYEAQFSRLHSFLSETEISWAREVSSILYPLFVYLHLDMVRCGLKGAVDGFYS
RFHEAFLQDSEQRAVIEQLRHVLTAQDVAANPKLRAFLEHKYTVHLTEPAYNYLLRYLQS
EDNSALCRVFTTHLQVDVAASRRTDYQLYGAAGGSTAGVDGGDAGDGMEVPVGIPQSEAA
LEALQDCIKKVREGPPTLTTICFYAFHHTEQMLNTAEVSPDSRLLAAGFDHSAVKLWSLR
ARKLKAKAHQADVSRVHLACDVLEEDVDEESGCGSEIKTLRGHSGPVFRTAFLTDSSGLL
SCSEDTTIRYWDLSSFTNSILYQGHAYPVWDVDVSPCSLYFGSSSQDRTARLWTFSRTYP
LRIYAGHLSDVDCIKFHPNSNYLATGSTDKTVRLWSTQQGASVRLFTGHRGPVLSLAFSP
NGKYLASAGEDQRVRLWDLASGTLFKDLRGHTDSVTSLSFSPDSSLVASSSMDNSVRVWD
IRSSHGGTPADGSSAELVGLYSGNTNNVLNVQFMACNLLLVTGTAQEKTEP
NT seq 1776 nt   +upstreamnt  +downstreamnt
atgaagcgggtccggacggagcagatccagtacgccgtgactcagtacctgaagaggcgg
cagtatgtggacaccgacgcctccttgaagggagccaaactgtctcagtccccggaggag
atggcggccagcctgacagtgcaaacagagtctggctgtgggaacgtggtctcggctgct
ccctgccaggctgacccgcagcagtatgaggcgcagttctccaggctgcactccttcctc
tcagaaacagaaatctcttgggctcgggaggtgagcagcatcctctatccgctcttcgtt
tacctccacctggacatggtgcgatgcggcctgaagggggcagtagacggcttttactct
cgtttccacgaggcctttcttcaggacagcgagcagcgcgccgtcatcgagcagctccgc
cacgttctcaccgctcaggatgttgccgccaaccccaaactgcgagctttcctggagcac
aagtacacggttcacctgacagagccagcctacaactacctgctgcgctacctgcagagc
gaggacaacagcgccctctgcagggtgttcactacacacctccaggtggatgtcgcagca
tcgagacgcacagactatcagctttacggagccgccgggggctcgacggcgggagtggat
ggaggagatgctggagatgggatggaggtccctgtggggatcccccagagcgaggcggcc
ctggaggctctgcaggactgcatcaagaaagtccgcgaaggcccacccactctcaccacc
atctgcttctacgccttccaccatacggagcagatgctgaacacggcagaggtgtcgccc
gacagtcggctgctggcggcaggctttgatcactccgctgtcaaactgtggagcctccga
gccaggaagctgaaggccaaagcgcatcaggcggacgtgtcgcgcgtccacctggcctgc
gacgtgctggaggaggacgtggacgaggaaagcggctgtggaagtgagataaagacgctg
aggggtcacagcggtcccgtgttccggaccgccttcctgaccgacagctccggcctgctc
tcgtgttctgaggacaccaccatccgctactgggacctgagcagcttcaccaacagcatc
ctgtaccagggccacgcctacccggtgtgggacgtggacgtcagcccctgcagcctttat
ttcggcagcagctctcaggaccgcacggcgcgcttgtggacgttctctcgcacgtacccg
ctgcggatctacgccgggcacctctctgacgtggactgcatcaaattccaccccaactcc
aactacctggcgacgggctccacggataagacggtccggctgtggagcacccagcagggg
gcgtcagtgcgcctgttcaccggccaccgcggccccgtgctgtcgctggcgttctccccc
aacgggaagtacctggcgtcggcgggcgaggaccagcgcgtcaggctgtgggacctggcg
tcggggactctgttcaaagacctgcgcggacacacggacagcgtcaccagcctgtccttc
agccccgacagcagcctggtggcgtcctcctccatggacaactccgtccgcgtgtgggac
atccgcagctcgcacggcgggacgccggccgacggctcctccgccgaactggtgggactt
tacagcggaaacaccaacaacgtgctgaacgtccagttcatggcctgcaacctcctgctg
gtgaccgggacggcgcaggagaagacggagccgtga

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