Oryzias melastigma (Indian medaka): 112138401
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Entry
112138401 CDS
T07439
Symbol
cpsf3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112138401 (cpsf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oml03021
]
112138401 (cpsf3)
03019 Messenger RNA biogenesis [BR:
oml03019
]
112138401 (cpsf3)
Transcription machinery [BR:
oml03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112138401 (cpsf3)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
112138401 (cpsf3)
U7-dependent histone pre-mRNA processing factors
112138401 (cpsf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
112138401
NCBI-ProteinID:
XP_024116728
Ensembl:
ENSOMEG00000010647
LinkDB
All DBs
Position
Unknown
AA seq
717 aa
AA seq
DB search
MGAELTGVVSHGEFSVRTGSTGRRGIVEEANMASKRRVDATVPAEESDQLLIRPLGAGQE
VGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPW
FLQKTSFKGRTFMTHATKAIYRWLLSDYIKVSNISADEMLYTETDLEDSMEKVETINFHE
VKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPSVKPDILI
TESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILDEYWQNHPE
LHDIPIYYASSLARKCMAVYQTYINAMNDKIRKAININNPFVFKHISNLKSMDHFDDIGP
SVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMTEPDEITTMSGQKL
PLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVH
IEVHNPRNTEAVTLNFRGEKLAKVMGSLADKKCAQGQRVSGILVKRNFNYHILTPSDLCK
YTDLSVGTVTQSQAIPFTGPISLLVSQLRNLAGDVQQVEGAEKITVKIFKSISLVHEAGM
VLLEWNSSPLNDMYADVVATVVLEVQSNPNTQKFLEGRRETFDEEVFVERLELMLHDMFG
DDCLNFSNSESFSVMVDGATATINPVTRVVICAEDESLREMIEVAVQRLYDALSPAF
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgggagcggaactaacgggagttgtatcgcacggagagttttctgtaagaaccggaagt
accggcaggcgcggcatcgttgaagaagctaacatggcgtccaagcgcagggtggacgcg
acggttcccgctgaagagagcgaccagctgctgatccggcctctgggggctgggcaggag
gtaggacgctcctgcatcattctagagttcaaagggaggaagattatgctagactgtggg
atccatcctggtcttgaggggatggatgcactgccgtacattgacctgattgatccggct
gagattgacctgctgctcatcagtcatttccacctggaccactgtggagctttgccttgg
tttcttcaaaagacgagttttaaagggcggaccttcatgacacatgctaccaaagccatt
tatcgttggctgctgtcagactacatcaaagtcagtaacatttctgctgatgaaatgctc
tacacggagacagacctggaagacagtatggaaaaggttgagaccattaacttccacgag
gtaaaggaggtggccggcatcaaattctggtgctatcatgctggccatgtccttggagct
gctatgttcatgattgagatcgcaggagtcaagttgttgtacacaggagacttctcccgt
caggaagacaggcacttgatggcggcagagattccgagtgtgaaaccagatattcttatc
acagagtccacttatggaacacacatccatgagaagcgggaggagagagaggcccgtttc
tgcaacacggtgcacgacattgtaaacagggagggtcgctgtctgatcccggtgtttgct
ctgggacgggctcaagagctgctgctcatcctggacgagtactggcagaaccacccagag
ctccacgacatccccatctactacgcttcgtctctggccaggaaatgcatggctgtgtat
caaacctacatcaacgccatgaacgacaagatccgcaaagccatcaacatcaacaaccct
tttgtcttcaagcacatcagtaaccttaagagtatggatcacttcgatgacattggtccc
agcgtggtgatggcctcccccgggatgatgcagagcggtctgtcccgggagctgttcgag
agctggtgtacggacaagaggaacggcgtcatcattgctggatactgcgttgaaggaacg
ctggccaagcacatcatgacagagccggatgagatcaccaccatgtcgggtcagaagctt
cctctgaagatgtctgtggactacatctccttctcggctcacacagactaccagcagaca
agcgagttcattcgagccctcaagcctccccatgtgattctggtgcacggagagcagaat
gagatggcccggctgaaagcggctctgatccgagaatacgaggataatgacgaggtgcac
atcgaggtccacaacccaaggaatacagaggctgtcactctgaacttcagaggagagaaa
ctggctaaggtgatgggctcactcgctgacaaaaagtgcgctcaaggtcagagggtttct
gggatcctagtcaaaaggaacttcaactaccacatcctgacgccgtccgacctctgcaag
tatacagatctctctgtgggcacagtcactcagagtcaggccatcccctttacaggaccc
atttctttgctggtcagtcagctgcggaacctggcaggtgatgtccagcaggtggaggga
gctgaaaaaatcacagtgaaaatctttaagagcatcagtctagttcatgaagctggaatg
gtgctgctggagtggaactcaagccccctcaacgacatgtatgctgacgtcgtggccact
gtcgtcttggaggttcagtcaaatcccaacactcaaaagtttctggagggccggagggaa
acgtttgacgaggaggtgtttgtggagcgactggagctcatgctacatgacatgttcggg
gatgactgtttgaatttcagcaacagtgaaagcttcagtgtgatggtggacggcgccaca
gcaactattaacccagtcacacgagttgtgatttgtgcagaagacgagtctctgagggag
atgattgaagttgccgtccaacgactctacgatgctctcagcccggccttttga
DBGET
integrated database retrieval system
