Oryzias melastigma (Indian medaka): 112138592
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Entry
112138592 CDS
T07439
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112138592 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oml03041
]
112138592 (prpf4)
Spliceosome [BR:
oml03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
112138592 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_TEP1_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
NBCH_WD40
WD40_MABP1-WDR62_1st
PRP4
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_RIG_2nd
Ge1_WD40
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_IFT140_1st
WD_LRWD1
Beta-prop_WDR19_1st
WD40_like
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
112138592
NCBI-ProteinID:
XP_024116921
Ensembl:
ENSOMEG00000020941
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSDEEDAGPVTKKSRVFYGSLEEKERERLSLQAAGSDAVRAGIKAGNINISSGETLEIED
RVSERQQEVLAEFERRRRARQITVSTDDAEVKAGLRALGEPITLFGEGPADRRERLRSVL
SVVGPDALKKSRKDEERARRSQEQCLQTWYHEGSASLKEARLWMARYSLPRAVARLEAAR
VQKEVSEANKTIRQQELHKSLRNLNNFCSQIGDDRPISFCHFSPDSRMLATASWSGLCKL
WSVPDCNLIRTLRGHNTNVGAIVFRPEAGISLDQSDINLASCAADGTVKLWNLESDEPVA
DIEGHSDRVSRVAWHPSGRFLGTTCYDNSWRLWDLEVQEEILHQEGHSKGVHDLSFHPDG
SLVATGGLDSFGRVWDLRTGRCVVFLEGHLKEIYSLHFSPNGHHLATGSGDNTCKVWEMR
NRKCLYTVPAHQNLLSTVRFQPTDGHFLLTGAYDNTAKVWSHPGWTPLKTLAGHEGKVMS
VDVSPDGKLIATSSYDRTFKLWLSE
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatgaggaagatgcaggtcctgtcacaaagaagagccgtgttttctacggaagc
ctggaggagaaggagcgtgagcgcctgagtctgcaggcagcaggaagtgatgcagtgagg
gcggggatcaaggccggaaacatcaacatttcctcaggggaaactctggagattgaggat
cgagttagcgagcggcagcaggaagtgctcgctgagttcgagcggcggcggcgagccaga
caaataacagtttccaccgacgacgcagaggtgaaggccggcctccgagcactcggggag
ccaatcacattgtttggagaggggccagctgaccgccgggagaggttgagaagtgttctg
tctgtggttggaccggatgctctgaaaaagtccaggaaagacgaagagagagctcggagg
tcccaggaacagtgcctgcagacctggtatcatgaaggctccgcctccctgaaagaagct
cgactctggatggccagatattctctgccgcgggcagtcgcacgcctcgaagctgctcgg
gttcaaaaagaggtttctgaagcaaacaagaccatccggcagcaggagctgcacaagagc
ctgaggaatctcaacaacttctgcagtcagatcggagatgatcggccaatcagcttctgc
cactttagccccgactccaggatgctggccaccgcgtcctggagtgggctgtgcaagctg
tggtcagtcccggactgcaacctgatccgaacactccgaggacacaacaccaacgttggc
gccatcgtcttccgcccggaggctggaatctctctagaccaatcagacatcaatttggcc
tcatgtgctgctgatggaacagtaaagctgtggaacctggagagtgatgaacccgtggca
gacattgagggtcacagcgacagagtgtctcgagtggcctggcatccctctggaagattt
ttggggacaacctgctacgataactcctggcgtctgtgggacctggaggtccaggaggag
atcctccatcaggagggtcacagcaaaggagtccacgacctgagcttccaccctgacggc
tcgctggtagccactggcgggttggactcattcggaagagtctgggacctgagaacaggg
cgctgtgtcgtcttcctggagggacacctgaaggagatctacagtctgcacttctctccc
aacggccatcatttggcaacaggaagtggtgacaatacctgtaaggtttgggaaatgcgc
aacaggaagtgtctgtacacagtcccggcccaccagaacctgctgtccactgtccgcttc
caacccacagacggtcacttcctgttgacgggggcttacgacaacacagcaaaagtgtgg
agccacccgggatggactccattgaagaccttggctggacatgagggaaaggtgatgagc
gtggacgtgtcgcccgacgggaagctgatcgccaccagctcgtacgatcgaacgttcaaa
ctctggttgtctgagtga
DBGET
integrated database retrieval system
