Oryzias melastigma (Indian medaka): 112138647
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Entry
112138647 CDS
T07439
Symbol
nup98
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96 isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112138647 (nup98)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112138647 (nup98)
03036 Chromosome and associated proteins [BR:
oml03036
]
112138647 (nup98)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
112138647 (nup98)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
112138647 (nup98)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
112138647
NCBI-ProteinID:
XP_024117014
Ensembl:
ENSOMEG00000018239
UniProt:
A0A3B3CF81
LinkDB
All DBs
Position
LG14:6166310..6201285
Genome browser
AA seq
1822 aa
AA seq
DB search
MFNSSFGTPFGGGTGGFGTSSTFGQQNTGFGTTGAFGTTGAFGTTTNTGGLFGSTQNKPG
GLFGSSTFSQPPTSSTSTGFGFGATSGTSTNLFGNAATGTSSGLFSQQNNAFGANKTATF
GSFGTNTNTGGLFGSTNATPNPFGGSSSLFGGSGFSAAQQPGTTVKFNPPTGNDTMVKAG
VTTSINTKHQCITAMKEYENKSLEELRLEDYQAGRKGPTNPIAGGTGSLFGGATPTSSAT
TGLFGPSTSNNSFAFGPNKTPFVSTAGAFGTTTGGLFGQPNQQTTGSLFKPFGGSTTTQS
SAFSFGGNTTMGQPNTSSMGLFGNTAAPQPGGLFGLTPTSTATGFGTGTGLFGQPSSGFG
AVGTQPSLFGNKATGFGTTTTSAPSFGTSTGIFGAKPLALGTGTNPTGFGFGTAPAAGSL
FGNKAATGALGTGLGTSFGTVGTGTGLFGNTQNKLGTSLGTVGAFGTTGFNTGTSSLGFG
APQQPVALIDPNANAAQQAMLQQQLSFLAYSPYGDSPLFRNPLSDPKKKEERLKPTNPTA
QKALITPAHYKLTPRPATRVRPKALTSAGASKSQLFDGLDDDEPSLTNGAFVPRKSIKKL
VLKNLNSSQYSSPLNKDGDDLASPSEYPQNGLSLVEDELQEIPDPRRQSNNDPEVTQFYV
NPIAKPIPQGRTQANLQDTITELNMHKVPRTGLELSNEDMSASLGEEYLQEDQEEEQQQE
EQRSPHPAGIVLNRVGYYTIPPLEDLADMVDENGECIVENFTVGRKGYGSIFFPGEVNLT
GLNLDEIVHFRRKEVIVYPDDKNKPPEGEGLNRRAEVTLDGVWPNDKTSCTQIRSPDRLA
DMNYEGRLEKASRKQGARFLEYRPESGSWVFEVNHFSKYGLQDSDEDDDVPPKADPKKLK
MMSLPASKLQHLLPPSQQQVAPQAQSVDLMSGVAEFDSDMADITQSLPPESMLGGEEEGT
LLQGEMDGTSPKLGGLVSEEHDSISASTHLASSMGINPHTLQIMKASLFAEDEDDVDVFQ
HQGGMKVSTDVSSPRLVLPASLGRPSVGGLLQTRFSAGHLSDSPRPSLRASPVGPEPPRS
VQWKGLGPSPFLLPPRTAEPPIRTVRVRRLGGAVPLKESVTQGKGGLLMDAGLFAGRSFR
VGWGPGWTLAHCGSRLSSQTSEPGASREADLADFSFLPKPARTKPLTESPYKVVLEQLVG
LDPLQGKTSEEDEDQTVLQRPLEISLKYSTVSVPDGSECPLVKPQPGVEALHAYAEWITE
LVEKEGGSEPLLGHWAEVWTLCEALWGRLGPADLEPDAETPSQYEQQLARRRSFSAWLSS
GATHRVEEEVSVAGKGCHIEAIFSYLTGNRISEACRLAQKEGDHRLSLLLSQATGSQMCR
DLLGLQLADWSRTQTDCYLTEERLRIYALLAGKPVWQSSESVVNVCSQLDWKRCIALHLW
YMLPPTASVADALAKYEAAFQGSAEGGKYSCAPLPPYLEAKHLDDDDDDDDEEESNRPLY
DLCFHLLKLYSDRHYSLQQLLEPLTVTWQRLDFRLSWHLWGVLQGLNFSHLSAARQGLLH
ASYAAQLESAGLWHMAVYILLHIPNHIERERAVRHVLSQHCPLEDTDQSLQREHFLTERL
LVPESWIHLAKANRAHRHCDRHQQALHLYRAGFWNQCHRLLIQHLASDCIINDKHDYLLE
FLEGLAVPEHCATILDWDTAGGVYLDYIRVIKTLQDIQQVENAGYELERLYTDVTSLCGR
IELLPCSCAKDRLAQSEMAKRVANILRAVLSLQQGDSATHPPGIPLTQLAPHIGRLPMPE
DYTLEELRGLTQSYLQQLIVSQ
NT seq
5469 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacagctcctttggtactccgtttggtggcgggacaggggggtttggcacatct
tctacctttggtcagcaaaacacgggttttgggacaacaggagcttttgggacaacagga
gcttttgggacgaccaccaacacaggaggactgtttggctccacccagaacaaacctggc
ggcctgtttggatccagcaccttcagccagccacccacttcctccacaagtactggcttt
ggcttcggagcgaccagtgggacctccaccaacctgtttggaaacgctgcaacaggcacc
agcagcggactcttctcccaacagaacaatgcattcggtgccaacaaaacggccaccttt
ggtagcttcggaacaaacaccaacaccggtggactgtttgggtcaaccaatgccaccccc
aatccctttgggggctccagctccttgtttggaggctctgggttctctgctgcacagcag
ccaggaacaacagtcaagttcaaccctccaacaggaaatgacactatggtgaaagcaggt
gtgaccacaagcatcaacaccaaacaccagtgcattacagccatgaaggagtatgagaac
aagtccctggaggaattgaggctggaggattaccaggcgggcagaaagggcccgaccaac
ccgattgctggaggcactggtagtctgtttggtggagccacccccacgtctagtgccaca
acgggtctcttcgggccatccacctccaacaacagcttcgcttttggtccgaataaaact
ccgtttgtatccacggctggggcattcgggacaaccacggggggtctgttcggccaaccc
aaccaacagaccaccggcagcctctttaaaccctttggagggtcaaccaccactcaaagc
tccgccttctcctttggtggcaacaccaccatgggtcagcccaacaccagcagcatgggt
ttgttcggaaacacggcggccccccagccggggggattgttcggtttaacgccgaccagc
acagccacaggatttgggacgggcactggattgttcggccaacccagctctgggtttgga
gcagttggaacacagccaagtttgtttggcaacaaagccacagggtttggtaccaccacc
accagcgctccgtcctttggcaccagtaccggaatctttggtgccaaacctttggcactg
ggaaccggaaccaaccccactggttttggttttggaacggccccagcagctggaagtctg
tttggcaacaaagccgccaccggagccctggggaccggactgggaaccagctttgggaca
gtgggaacaggaaccggtctgtttggaaacacccagaacaaactgggcacctcgctggga
acagtcggagcctttggaacaacagggttcaacaccgggacaagctcgctgggctttgga
gcaccgcagcagcctgttgcgcttattgatccaaacgctaacgctgcccagcaggccatg
ctccagcagcagctgagcttcctggcatactcgccgtacggagactcgccgttgttcagg
aacccgctgtcagaccccaagaaaaaggaagagcgcctgaagcccaccaatcccaccgct
cagaaggctctgatcacgcccgctcactacaagctgacccccagacccgccaccagagtc
cggcccaaagcactcacgtctgcaggagcttccaagtcgcagctcttcgatggtctggat
gacgacgagccctcgctcaccaacggagcctttgtacccaggaagagcatcaagaaactg
gtcctgaagaacctgaacagcagccagtacagcagtcctctgaacaaagacggcgacgac
ctggcctccccttcagagtaccctcagaatggactcagcctagtggaggatgagcttcag
gagattccagatccacgccgtcagtccaacaacgatccagaggtcactcagttctacgtc
aaccccatcgccaagccaattcctcaaggccgcacccaggccaacctgcaggacaccatc
actgagctcaacatgcacaaagtgcccaggactggactggagctgagcaacgaggacatg
tctgcgtctctgggggaggagtatctgcaggaggatcaggaggaggagcagcagcaagag
gagcagcgatctcctcaccctgcaggtatcgtcctgaaccgggtcgggtattacaccatc
ccccctttagaggatctggctgacatggtggatgaaaacggagagtgtattgtggagaac
ttcactgtcggaaggaaaggatacggctccatcttcttccccggggaggtcaatttgacg
ggcctgaacctggacgagatcgttcacttcagacgcaaagaggtcatcgtgtatcccgat
gacaaaaacaagccacctgagggggaggggcttaacagacgggccgaggtgactctggac
ggcgtctggcccaacgacaaaaccagctgcactcagatcaggagccccgaccgcctggcg
gacatgaattatgagggccggttagagaaggcgtcccgcaaacagggtgcacgtttcctg
gagtacagaccagagagtggatcctgggtgtttgaggtcaaccatttctccaagtacggc
ctccaagattcggatgaagatgacgacgtcccacccaaagcagaccccaaaaaactcaag
atgatgtcacttcctgcctccaagctgcagcatctgcttcccccatcccagcagcaggtg
gcaccacaggctcagtctgttgacctcatgagcggcgtggcggagtttgacagcgacatg
gctgacatcacccagagccttcctccagagagcatgctgggaggtgaggaggagggcact
cttctgcagggggaaatggacggaaccagcccaaagctcggtggtctggtgtctgaggag
cacgacagcatctctgcatccacacacctggcctcctccatggggatcaacccgcacacc
ctgcagatcatgaaggcgtctctgtttgccgaggatgaagatgacgtagacgtgttccag
caccagggtgggatgaaggtctccactgacgtctcgtctccacgcctcgtcttgccagct
tctctgggtcggccctctgttggtggacttctccagactcgcttctctgctggtcacctc
tctgactcgccacgcccttcccttcgagcatctccagttgggccagaacccccccgctcg
gtacaatggaaaggactgggtccctcccctttcctgcttccccctcggacagcagaaccc
ccaatcaggacggtcagagtgcggcgcttgggcggagctgtccctctgaaagagtctgtc
actcaggggaagggaggtctgctgatggacgcagggctgtttgctggccgctccttcagg
gtgggctggggtcccggctggacgctggcccactgcggtagcagactcagctctcagaca
tcagaaccaggagcgagccgagaggcggacctggccgacttcagcttcctgcccaaacct
gccaggaccaaacctttgacagaaagtccctacaaggtggttcttgagcagctggtgggc
ctagatcctcttcagggtaagaccagtgaggaggatgaggaccagaccgtgctgcagcgc
cccctggagatcagcttgaagtacagcactgtcagcgttccagacgggtctgagtgtcct
ctagtgaagccacagcccggcgtggaggctctgcacgcgtatgccgagtggatcacagag
ctggtggagaaagagggcggctctgagcccctgctgggtcactgggctgaggtctggact
ctgtgtgaggccctctggggccgcctgggccctgcagacctggaacctgatgctgagacg
ccgagccagtatgagcagcagcttgccagaaggaggagcttctctgcctggctgtcctct
ggtgccacccaccgagtggaggaggaggtgtctgtggcgggaaagggttgccacatagag
gccatcttcagttacctgacaggaaaccgaatcagtgaggcatgtcgactggcgcagaaa
gaaggagaccaccgtctgtccctgctgctttctcaggccaccggctctcagatgtgccgc
gacctgctgggcctgcaactcgccgactggagccgcactcagacggactgctacctgacc
gaggaacggcttcgcatctatgctctgctcgccggaaaaccggtgtggcagtcctcagaa
tcggtggtgaacgtgtgctcgcagctcgactggaagcgctgcatcgccctccacctctgg
tacatgctgccccccacggcgtccgtggctgacgccctcgccaagtacgaggcggccttc
cagggctcagctgagggagggaagtattcctgcgcccctctccccccctacttggaggca
aaacaccttgatgatgatgatgatgatgatgacgaggaagagtctaatcgtccattgtac
gatctgtgcttccacctgctgaagctctacagtgacagacactacagcctgcagcagctg
ctggagcctctgactgttacctggcagcgcctagatttccggctcagctggcacctgtgg
ggcgtcctgcaggggctgaacttcagccacctgagtgcagcgcgccagggtctcctccat
gccagctacgccgcgcagctggagagcgctggcctctggcacatggccgtctacatcctg
ctccacatccccaaccacattgagcgggagcgagccgtcaggcatgtgctgagccagcac
tgccccctggaggacacggaccagtcactgcagagggaacacttcctgaccgagcggctg
ctggttccagagtcgtggatccacctggcaaaggccaaccgagcccaccggcactgcgac
agacaccagcaggccctgcacctgtaccgggccggcttttggaaccagtgccaccggctg
ctgatccaacacttggcctcagactgcataatcaacgacaagcacgactacttgctggag
ttcctggagggtctggcagtccctgaacactgcgccaccattctggactgggacacggcc
gggggggtttacctggactatatccgagttatcaagactcttcaggacatccagcaggtg
gagaacgccggttacgagctagaacgtctttacaccgacgtcacctcgctctgtggacga
atcgagctgcttccctgcagctgcgccaaggatcgcctcgcccaatcagagatggcaaag
cgtgtggccaacatcctgcgcgcagtgctgagcctgcagcagggggactcagcgacccac
ccccctggtatcccgctcacccagctggcgccacacatcgggcgtctgccgatgccggag
gactacacgctggaggagctgcggggtctcacgcagtcatacctgcagcagctgatcgtc
agccaatga
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integrated database retrieval system
