Oryzias melastigma (Indian medaka): 112138662
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Entry
112138662 CDS
T07439
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112138662 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oml03021
]
112138662 (pcf11)
03019 Messenger RNA biogenesis [BR:
oml03019
]
112138662 (pcf11)
Transcription machinery [BR:
oml03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112138662 (pcf11)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
112138662 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
VHS
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
112138662
NCBI-ProteinID:
XP_024117033
Ensembl:
ENSOMEG00000017807
UniProt:
A0A3B3DSH4
LinkDB
All DBs
Position
LG14:6383439..6396668
Genome browser
AA seq
1465 aa
AA seq
DB search
MEDGAARQDACREYQSSLEDLTFNSKPHINMLTILAEENLQFAKDIVAIIEAQITKAPPS
EKLPVLYLVDSIVKNVGGEYLAEFAKNLVTSFICVFEKVDENTRKSLFKLRSTWDEVFPT
KKLYLLDVRVNSLDPAWPIKPLPPTVNSSIHINPKFFKQTEEPPSPQPAPAQPPPPPVAP
KPPSTAGQSSLTQEQLIRQQLLAKQKQLLELQQKKIELELEQTKAQLAVGFSLQQAPAAP
PQAAPSPFPKPLSQSTPVIRPWIPPQPQPDPKLPTRDPRLNRPALTPVQSKEPPVPRKEA
SPSVQNLTVTPEKRLPEKPVKPDRTRALRKDTPDEKSKYKLPKSVQNQKEAVEAEPKPPE
KKDPRLKKRLLEPKDDEPKDKKRSSDKKERDDVPRSNKSKLHNGAAAKHEREDAGDKAEL
KSGGNARTHARKRTRSRSRSPNTSPKRKDRRSPKSRPRSSSPSPHKPGKPRRVRPDNLTL
NKPGHDERLAPKKNQADSRRPKRPVEERHVDSLRISDGGAKDGKEAHRWRSGWENKHLKL
EESHPKAGPQRHKPYGGPARPSTPRTPKHRLSVDANLQIPEVLNSASKKDLLMRASKRVE
SGEISQEDFLSMAHQINHLFQYQEEKQLRSDSWGGPGELPPKKQAVLTTPGSMQPHSHMD
PAELSYFKHKSKLKRTQVNHGAANEDWESQDSLEGGGDPGPASSAAIHPPSHKFSRPPRD
RQGERRSKEREESRPPLAPMIEDYNHGKEFPTLKSLPDLRFRRRADPRKSSEREWTSPLE
RQLYKEKKGGYDAPRRYEPRHSEPRRPEGPPLPEALPHRNCPSPGGLETMAPQFRREPLS
PPRQGNAADSPVARFESPNSEHSDDGPIILDPHLPPQHMLKGPAFRPHGNSPGHTPPHDG
GHPPRYSGPAHIGPARPHPPGWTGGHMEEPHHQGPGRFDGGGPSHLMVDMTEPHQGPGRF
GAPMGQQPGPGRGPGPMDGSVQHFDPPGPFGGPMGFQQQHPPHFEDLSNQLRPPRLDNPV
CFDHPGQPVPRFDMPNAPVQGGGAHYDFVPGQQGPPRFGPQQNLQPLVRPMVPDVYNNPM
PPQQNFGMAPQPFQEPMNPQFAPAPMAAANFNPQFGQPGPGPFYNPPAPTINMQQPVMAN
MNPPFLPQNQGPFGQQAPQVPSAGEHFGQVDVESLLSKLISTGIIKPSQPDPALPVSSES
PAAPAPPPEPEEEEEQEVEENDIPDLTGFSIEPMKQRYESVVTKLYTGNQCCLCSMRFTT
AQTDMYADHLDWHFRQNHAGKQASKKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKE
NEEEVQKTQAAAKEKEFQSVRATKDQVGELCEICQEPFETYWVEEEEDWFLKNAIKVDEK
NFHPSCFEDYKNTSSYLDATPSPSKLLTEHPLGAFKTDEEPTSCAMAVASVKQEVESPQE
EDCEPPGSEEAVGGTPDAAPSEDPA
NT seq
4398 nt
NT seq
+upstream
nt +downstream
nt
atggaggacggcgcggcgcgccaggacgcgtgtcgggagtaccagtcctccctggaggac
ctgacgttcaacagcaagccgcacatcaacatgctcaccatcctggccgaggagaacctg
cagttcgccaaggatatcgtcgcaataattgaagctcaaataaccaaggcgccaccctcc
gagaagctcccagttttgtacttagtggactccatagtgaagaatgttggaggagagtac
cttgcagagtttgctaaaaacctagtcacttcatttatatgtgtctttgaaaaggtggac
gaaaacacgcggaagagcctgttcaagcttcgctccacgtgggacgaggtgttccccaca
aagaagctgtacttgctggatgtcagggtcaactccttggacccggcttggcccatcaag
ccgcttccgcccaccgttaactccagcatccacatcaaccccaagttttttaagcagaca
gaggagcccccctccccacagccggcccccgctcagcctccgccgccaccggtcgctcct
aagccgcccagcactgcggggcagtccagcctgacccaggagcagctgatccgacagcag
ctactggccaagcagaagcagctcctggagctccagcagaagaagatcgagctggagctg
gagcagaccaaagcacaacttgcggtcggattcagcctccaacaagctcctgcagccccc
ccacaggcagcaccgagcccattccccaagccccttagccaaagcacgcctgtgatccga
ccatggatccctccacagcctcagcctgacccaaagctgcccaccagagacccccgtctg
aaccgccctgctctgactccagttcaaagcaaagagcctccagtccccaggaaagaagcc
tcccccagcgtccagaacctcaccgtcactccggagaaaagactgccagagaagcccgtg
aagcccgatagaaccagagccttgcggaaagacacgccagatgagaaatcaaagtacaaa
ttgccaaaaagcgtccagaaccaaaaggaggcggttgaggctgaacccaaacccccggag
aagaaggatccgcggctgaagaagcgactgctggagccgaaagacgatgagccaaaggac
aagaagagaagcagcgacaagaaggagcgagacgacgtcccgcgctccaacaagagcaag
ctgcacaacggcgcggcggccaaacacgagcgtgaagacgccggcgacaaggctgagcta
aagagcggcggcaatgcccggacacatgccaggaaacgcaccagatcacgctcacggtcc
ccaaacacttctcctaagaggaaagacaggcggtcgcccaaaagccgaccccggagcagc
tctccctccccccacaaacccggaaagccccgaagagtccgacccgacaacctgacctta
aacaaacccggccacgatgagcggcttgcccccaagaagaaccaggcagatagcaggagg
cctaaaaggcccgtggaagagcgccacgtcgactccctgcgcatcagtgacgggggggcc
aaggacgggaaggaagcgcaccgctggaggagcggctgggagaacaagcacctgaagctg
gaggagtcgcacccaaaggccggaccccagaggcacaaaccctacgggggaccggcccgc
cccagcaccccgagaacccccaagcaccgcctcagcgtggacgccaacctgcaaatacca
gaagtcctgaactctgcctccaagaaggacctgctgatgagggccagcaagcgcgtggag
agcggcgagatctctcaggaggacttcctgagcatggcccaccagataaaccacttgttc
cagtaccaggaggagaagcagctgcgctccgacagctggggcgggcccggggagttaccc
cccaagaagcaggcggtcctgaccacgcctggttccatgcagccccactcccacatggac
ccggccgagctgtcttacttcaagcacaagtccaaactgaagagaacgcaggtcaaccac
ggagccgccaacgaagactgggagagccaggattctctggagggggggggtgatccggga
ccagccagcagcgcagccatccaccccccctcacataagttcagccgaccccccagagac
agacaaggggaacgccggagtaaagagagggaggagtctcggccccccctcgcccccatg
atcgaggattacaaccacggcaaagagttccccaccctcaagtctctccccgaccttcgc
ttcaggaggagggccgacccccgaaagtccagcgagcgggagtggacgtcccccctggag
cggcagctgtacaaggagaagaagggcggctacgacgctccccggcgctacgagcccaga
cactccgaaccccgccggcctgaaggcccccccctccccgaggcgctgccccacagaaac
tgcccgagcccgggggggctggaaacgatggcaccgcagttccggcgtgagccgctgtcc
cccccgcgtcaggggaacgccgcggacagtccggtggcgcgttttgagagccccaacagc
gagcactcggacgatggtcccatcattctggacccccacctgcccccccagcacatgctg
aaggggccggcttttcggccacatggtaactctccaggacacacaccccctcacgacgga
ggtcacccccctcgatacagcggccctgcccacatcggccctgccaggccacacccccca
ggctggacaggaggacacatggaagagcctcaccatcagggtccgggcaggtttgatggg
ggggggccgtctcacctgatggttgacatgactgagccccaccaagggcccggcaggttc
ggggctcccatgggccaacagccggggccggggaggggcccgggccccatggacgggtca
gtgcagcactttgacccccccggtccctttggcggtcccatgggctttcagcaacagcac
cccccccactttgaagacctgtcaaaccagttgagacccccccggctggacaaccctgtt
tgtttcgatcaccccggccagcccgtcccccgtttcgacatgcccaatgctcccgtgcag
ggagggggggcacactacgattttgtccccggccagcaggggccccccaggtttggtccc
caacaaaacctgcagcctcttgtgaggccgatggtcccagatgtttacaataaccccatg
cccccccagcagaactttggcatggccccccagccgttccaggagcccatgaaccctcag
tttgcccccgcaccaatggcagccgcaaactttaacccgcagtttggccagccgggcccc
gggcccttctacaaccctccagcccccaccatcaacatgcagcagccagtgatggcgaac
atgaacccccccttcctgcctcagaaccagggtccgttcgggcagcaggctcctcaggtg
ccctccgccggggaacacttcggtcaggtcgacgtggagtctcttctgagcaaactcatc
tccaccggcatcatcaagccgtcacagccggaccccgccctccccgttagcagcgagtct
cctgcggcccccgcacctccacctgagcccgaggaggaggaggaacaggaggtggaggag
aacgacatcccggacctcaccggcttcagcatcgagcccatgaaacagcggtatgagagc
gtggtgaccaagctatacacagggaaccagtgctgcctgtgcagcatgcgcttcaccacc
gcgcagaccgacatgtacgctgaccacctggactggcacttccggcagaaccacgccggc
aagcaggccagcaagaaggtgacgcatcggcgctggtactacagcctgacggactggatt
gagtttgaggagatcgctgacctggaggagagagccaagagccagttctttgagaaggag
aacgaggaggaggtgcagaagacccaagcagctgccaaagagaaggagtttcagagcgta
agagccaccaaggaccaggtgggagagttgtgtgagatctgtcaggaaccctttgagacc
tactgggtggaggaagaggaggactggttcctaaaaaacgccattaaagtagacgagaag
aacttccacccgtcctgctttgaagactacaaaaacacgtcgtcgtacttggatgccacg
ccatcacccagcaagctactgaccgagcacccgctgggggcttttaagacggacgaggag
cccacttcctgtgcgatggcggtggcgtcagtgaaacaggaagtggagtctccacaggaa
gaggattgtgaacctcctggttctgaggaggcggtgggtggaactccggacgctgcgccg
tcagaggatccggcgtga
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integrated database retrieval system
