Oryzias melastigma (Indian medaka): 112138775
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Entry
112138775 CDS
T07439
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4 isoform X1
KO
K10755
replication factor C subunit 2/4
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03030
DNA replication
oml03410
Base excision repair
oml03420
Nucleotide excision repair
oml03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112138775 (rfc4)
03410 Base excision repair
112138775 (rfc4)
03420 Nucleotide excision repair
112138775 (rfc4)
03430 Mismatch repair
112138775 (rfc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oml03032
]
112138775 (rfc4)
03036 Chromosome and associated proteins [BR:
oml03036
]
112138775 (rfc4)
03400 DNA repair and recombination proteins [BR:
oml03400
]
112138775 (rfc4)
DNA replication proteins [BR:
oml03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
112138775 (rfc4)
DNA Replication Termination Factors
ELG1-RFC complex
112138775 (rfc4)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
112138775 (rfc4)
DNA repair and recombination proteins [BR:
oml03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
112138775 (rfc4)
Check point factors
HRAD17(Rad24)-RFC complex
112138775 (rfc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
RCF1-5-like_lid
DNA_pol3_delta2
Rad17
AAA_30
AAA_assoc_2
AAA_22
AAA_16
AAA_11
Mg_chelatase
DUF815
Gp44_lid
AAA_24
AAA_19
RuvB_N
AAA_14
SLFN-g3_helicase
ResIII
KH_DUF2096_C
AAA_28
AAA_5
Cdc6_lid
DNAX_ATPase_lid
AAA_7
AAA_3
Motif
Other DBs
NCBI-GeneID:
112138775
NCBI-ProteinID:
XP_024117175
Ensembl:
ENSOMEG00000015231
LinkDB
All DBs
Position
Unknown
AA seq
389 aa
AA seq
DB search
MFVLNVCDVKLGEHFNVEIQQSSKLLLNLQPDGAMQAFFKPAGVSKPLKDKGPSGPSAEK
KAKSVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAAR
ELYGPELYRQRVLELNASDERGIQVIREKVKTFAQLTVSGTRPDGKLCPPFKIIILDEAD
SMTAPAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLANHIQEERLLE
ICEKENLKYTKESIAALVQVSEGDLRKAITFLQSAARLNVDKEITDKAIVEIAGVVPSKM
IEGLLQTCFKGTFERLEVTVRNLVNEGYAATQILNQLHEAIIESDLKDKDKSIITEKMAV
VSKCLSDGADEYLQMLSLCSVIMQQASQS
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtgctaaacgtgtgtgacgtgaagctgggagaacattttaatgtggaaattcaa
caatccagcaaattactattaaaccttcagcctgatggagccatgcaggcttttttcaaa
ccagctggtgtcagcaaacctctgaaggataaagggccgtctgggcccagtgcagagaag
aaagcaaagtctgttccttgggtagaaaaatacagaccaaaatgcgtggatgaggtggcc
ttccaggaggaggtggtggcggtgctgaagaaatctctagaaggagcagatcttcctaac
ttgctcttctatggcccacctggaacaggaaagacttccacgatactagcagctgctaga
gaactttatgggccggagctgtaccggcagagagtgctggagctgaacgcctcggatgag
cgaggcatccaggtcatcagagagaaagtgaaaacctttgctcagctcaccgtgtcagga
acccgtccagacggaaagctgtgtcctccttttaagatcatcattctggacgaggcggac
tccatgacggcgccggcgcaggccgctctaaggcggactatggagaaggagtctcgaaca
acccgcttctgtctcatctgtaactacatcagcaggattattgagcccctaacatccaga
tgttccaagtttcggttcaaacctttggccaatcacatccaagaagagcggctgctggag
atctgtgagaaggagaacctcaaatacaccaaagagagtattgcagcactggtgcaggtg
tctgagggagacctgcggaaggccatcacattcctgcagagcgccgctcggctcaacgtg
gacaaggagatcaccgataaagctatcgttgagatagcaggggtggttccttccaaaatg
atcgagggcttgctgcagacatgtttcaaggggacgtttgagagactggaggtaacagtc
aggaacctggtgaatgaaggctatgcagccactcagatcctcaaccagctgcacgaggcg
atcatagagagcgacctgaaggacaaagacaagtccatcattaccgagaagatggcggtt
gtgagtaagtgcctctctgatggagcagatgaatacctgcagatgctgagtctgtgttct
gtcatcatgcagcaggcctcccaaagctaa
DBGET
integrated database retrieval system
