Oryzias melastigma (Indian medaka): 112138863
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Entry
112138863 CDS
T07439
Name
(RefSeq) zinc finger BED domain-containing protein 1
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112138863
04121 Ubiquitin system [BR:
oml04121
]
112138863
Transcription factors [BR:
oml03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
112138863
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
112138863
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dimer_Tnp_hAT
zf-BED
hAT-like_RNase-H
zf-C2H2_12
Motif
Other DBs
NCBI-GeneID:
112138863
NCBI-ProteinID:
XP_024117292
LinkDB
All DBs
Position
Unknown
AA seq
569 aa
AA seq
DB search
MEPARKRRISPVWEHFDLISPKKVRCLVCAKELGYNNNTSSMLRHYRAFHENEDEVGASS
SHATRKQELDEALVSMIVKDTQPFTIVEDIGFRGFVSKLDPNYVLPTRQALKAMVEVKYE
AEKEKTKAKIQKAAAVSLTSDMWTSMNLDAYLAITCHFVGEKSKLCSVLLGVQEFPQSHT
AENIAHEKASLMAEWGITNKVTCFVTDGAPNMVACVRELKLRHHICIAHTLNLVVKKTLE
QNPILSGIRAKARKLVGFFRSSTTAKEKFTQVQLHMGMPVRKLLQEVETRWNSTYLMLQR
LVDLREPVGAALAGLQHDIPMITSEEFKIVEGCMSLLSPFYEATVELSAEENVSASKVIP
LLKMLEQNLQEEMTKPGPPAALEMGEVLIRQLREKLYTLQSMSIMSLATLLDPRFKIIGF
FSQTKATEAVKRLTAECSTIIRSQQTREDIPQASTSNEVTGGSKLWHRLDVSVMEARTSQ
NATADATVEVQRYLSEPNIGRLENPLEYWERQQLIYPTLYKLAIAFLSTPASSVPCERVF
SKAGEVVSKRRNRLKPKTVEKLLFLNKIE
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggagccagcaaggaagaggaggatctcccctgtatgggaacactttgatctgatatct
cctaaaaaggtgagatgtttagtgtgtgccaaggaattgggatacaataacaacacctca
tccatgttaaggcattaccgtgcctttcatgagaatgaggacgaagtaggagcttcatct
tcccatgccaccagaaaacaggaacttgatgaagcccttgtttctatgattgtgaaggac
acacaacccttcactattgtggaagatattggattcagggggtttgtgtccaaactggat
cccaattatgttctccctacaaggcaggctttgaaggccatggtggaggtcaaatatgag
gcagaaaaggagaagacaaaggctaaaattcaaaaggcagctgctgttagccttacttca
gatatgtggacatccatgaatttggatgcctacctggctataacttgccattttgttggt
gagaagtctaagctctgctcagtgttgttgggagtgcaagaattcccccagtcacacacc
gctgaaaatattgctcacgagaaagcctcattgatggcggaatggggaatcaccaataaa
gtgacatgttttgtcacagatggtgctcccaacatggttgcgtgtgtgagagagctaaag
cttcggcatcacatttgcattgcccatactcttaatctggtggttaagaagacactggag
cagaacccaatcctctctggcatccgggccaaagcaaggaagctggttggcttctttaga
agcagcactactgccaaggagaagtttacacaagtgcagcttcatatgggcatgcctgta
agaaaactcttgcaggaagtggagaccagatggaacagcacatatctgatgctccaacgt
ctggttgatctcagagagcctgttggagcagctttagcaggactacaacatgacattccc
atgatcacctcagaagaatttaaaattgtcgaaggttgtatgtctttgctgtcccccttt
tatgaggccactgtagagctgtcggcagaggaaaacgtatctgcttctaaagtcatacct
cttctgaaaatgctggaacaaaatctccaggaggaaatgacaaaaccaggtcctcctgca
gcattggaaatgggagaagtgctcatcaggcagttacgggagaagctgtacacattacag
tcaatgagtataatgtcacttgccacactcctggatccccggttcaaaattattggattc
ttcagtcaaacaaaagccactgaagctgtgaagcgactgactgcagaatgctcaacaatt
ataaggtcacagcaaacccgagaggacatcccccaggcatctacctctaatgaagtcact
ggaggtagcaaactttggcatcgtttagacgtcagcgtcatggaggcaagaacgtcacaa
aatgcaactgcggatgctactgtggaggtgcagcgatatttgtccgaaccaaacattgga
agacttgaaaaccctctggagtactgggagagacaacaactcatctacccaaccctgtac
aaacttgcaattgcctttctgtccacacccgcatcttctgttccctgtgaaagagtcttt
tctaaagcaggagaagttgtgtctaaaagaagaaatcgcttgaaaccaaaaactgtcgag
aaactcttgtttctaaataaaattgaataa
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