Oryzias melastigma (Indian medaka): 112139207
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Entry
112139207 CDS
T07439
Symbol
cftr
Name
(RefSeq) cystic fibrosis transmembrane conductance regulator isoform X1
KO
K05031
cystic fibrosis transmembrane conductance regulator [EC:
5.6.1.6
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml02010
ABC transporters
oml04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
112139207 (cftr)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
112139207 (cftr)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
oml02000
]
112139207 (cftr)
Enzymes [BR:
oml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.6 channel-conductance-controlling ATPase
112139207 (cftr)
Transporters [BR:
oml02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC7 subgroup
112139207 (cftr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CFTR_R
ABC_membrane
ABC_tran
AAA_21
AAA_29
DUF87
RsgA_GTPase
AAA_16
nSTAND3
AAA_23
MMR_HSR1
AAA_22
T2SSE
FtsK_SpoIIIE
Dynamin_N
AAA_30
Zeta_toxin
NTPase_1
nSTAND1
MeaB
Motif
Other DBs
NCBI-GeneID:
112139207
NCBI-ProteinID:
XP_024117692
Ensembl:
ENSOMEG00000006105
LinkDB
All DBs
Position
LG6:complement(6590577..6645144)
Genome browser
AA seq
1503 aa
AA seq
DB search
MQKSPVEDANFLSRFLFWWITPLLRRGLNKKLELADVYKAPSFDLADTLSERLEREWDRE
VVSSKRPRLLKALARCFFLPFAFFGILLYLGEASKTVQPQLSGRIIASFDPFHAPERRQG
YYLALGLGLLLTARFILLQPAIFGLHHLGMQIRIALFSLIYKKTLKLSSKVLDKITTGQL
VSLMSAHLNKLDESLGLAHFVWITPLQCMLCAGLVWELIEVNSLWGLVAMILLGIFQAWL
SMTMTPPRAKRGAFTSRRLALTSEIMENIHSVKAYGWEEVMETIIKNIRKDEMTLTRKIG
SIRYFYSASYFFSAIVVIMAAIVPQALTNGIILRRIFTTASYCIVLRMTLTRQLPGSIQM
WYDTLALIEKIEDFLLKEEYRVLDYSLTTVGLELVNVSASWDEGIVKLFEKIQQENKANG
HLNGDGGLFFTNLYVTPVLKNISLLLEEGKMLAVAGSTGSGKSSLLMMILGELVPTEGKI
RHSGRISYSPQTSWIMPGTIRDNILFGLTYDEYRYNSIIKACQLEEDFASLPEKDKTSLG
EGGSTLSGGQRARICLARSVYKDADLYLLDAPFTHLDIATEKEVFDKCVCKLMGSKTRVV
VTSKLEHLKRSDKILMLHNGECYFYGTFSELQAQRPDFSSLLLGLEAYDNIVAERRSSIL
TETLRRVSVDETAGFRGPEALRQSFQHAPPQSHNGVDGYPEKRKQSLILNPIAAARKISF
IGNSQQMGTLPPSLMEEGVNELSDRRFSVVPEDDQVEEVLPRSNLYHHGLQHLGGQRRQS
VLAFITNAQGQDRRDKMQSSFRKKLSVTPQYDLATELDIYARRLSKDSVFEITEEVDEED
MEQCFADERENVFVTTSWSTYLRYVSVNRTLIYVLIFIAIVFAIEVAGSVIGIFLITDKV
WRDGANPNSPNYIDDQPINSSSPPVHLAVIVTPTSAYYIIYIFVAHSDSILALGVFRGLP
LVHSLLTVSERLHEQMLSAVLRAPMSVLNSIKTARIMNRFTKDMAIIEDMLPPMLFDLIQ
LTLLVIGCIFTVSIMRPYIFIAAIPLAVIFVALRKYYLRTGQQLKQLEAEAARTPIFSHL
VLSLKGLWTIRAFGRQTYFETLFHKALNTHTATWFHYLSALRWFLFRCDVLFVLFFTAAA
FIAVGTNQDRPGEIGIIVALAMLILGTFQWAIITSINVDGLMRSVDRVFKFIDLPSEDMP
TGKPGGRQGSDLVIDNPHAQIHWPNRGQLDVKGLTVTYTETGHPVLSNISFSVDGGQSVG
LLGRTGSGKSTLLSALLRLACTEGEMSIDGVSSSSVSIQTWRKAFGVVPQRIFILTGTFR
MNLDPYGRYSDEDLWRVAEEVGLKSVIEQFPDKLDFHLVDGGSVLSNGHKQLICLARSIL
SRARILLLDEPSAYLDPITLVVLRKTLKQSFSSCTVILSEHKVEPLLECQSFLMVENGAL
KNYESLQKLMSEVTHLRQAMSPADQHRFPMLHRLNSTKRALPPTTKISSLPEEAEDEVQD
TRL
NT seq
4512 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagtcaccggtggaagatgccaactttctctccagattcctgttttggtggatc
actccactgctgaggaggggcctcaacaagaagttggagctggctgatgtgtacaaggct
ccgtcgtttgatctggcagacacgctgtcagagagactagagagggaatgggacagagag
gtggtgtcatccaagaggcccaggctgctgaaagccctggcccgctgtttcttcctgccc
ttcgccttcttcgggatcctgctctacctcggggaagcttctaagactgtgcagcctcag
ctttctggacgcatcattgcttccttcgatcccttccacgctccggagcgacgtcaggga
tactacctggccctggggctgggcctcctcctcaccgctcgcttcattcttctgcagccc
gccatcttcggcctccatcaccttggcatgcagatccgcattgctctgtttagcctcatt
tacaagaagaccctgaagctctccagcaaagtcttggataagatcaccacaggtcagctg
gtcagtctgatgtctgcccacctcaacaagctggacgagagtctgggtctcgctcacttc
gtgtggatcacgcctctgcagtgcatgctgtgtgcgggtctggtctgggagctgattgag
gtgaactccctctggggtctggtggccatgatcttactgggcattttccaagcctggctc
tctatgacaatgactcctcctcgcgcaaagcggggcgcattcaccagccgccgcctggct
ctcacctcagagatcatggaaaacatccattctgtcaaagcttacggctgggaggaagtg
atggagacaatcattaagaacatcaggaaagatgagatgactttaaccaggaagatcgga
tccattcggtacttttacagcgcctcctacttcttctccgccatcgtggtgatcatggcg
gccatcgtgcctcaggcgctgaccaacggcatcatcctgcggcggatcttcaccaccgcc
tcgtactgcatagtcctgcgaatgacgctcacgcggcagttgccgggctccatccagatg
tggtatgacactctggccctcattgaaaagatagaggactttttgttaaaggaagaatac
agagttctggactacagcctgacgactgttggactggagctggtcaacgtgtctgcgtcc
tgggacgagggcatagttaagctgtttgagaagatccagcaggagaacaaagcaaacggg
catctgaacggggacggagggctctttttcaccaacctgtacgtcactcctgtccttaaa
aacatcagcttacttttggaggaaggcaagatgctggcggttgctggatcgactgggtct
gggaagagttcgctgctcatgatgatcctgggagagctggtgccgacagagggtaaaatc
agacacagtggccggatttcctactcaccgcagacttcttggatcatgccagggaccatc
cgtgacaacatcctgttcggcctgacctatgacgagtaccggtataactccatcattaag
gcctgccagctggaggaggattttgcgtcactgcctgagaaagacaagacatcactcggt
gaaggcgggtcaactctcagcggcggtcagagagcacgcatctgcctggccaggagtgtg
tataaagatgcagacctttacctgctggatgctcctttcacccacctggacatcgcaaca
gagaaagaggtctttgataaatgtgtctgcaagctgatgggctccaagactcgagttgtg
gtcaccagcaagctggagcatctcaagcgctccgacaaaatcctcatgctgcacaacgga
gagtgctacttctacggcaccttctcagagctgcaggcccaacgccccgacttcagctcc
ctgctgctcggtctcgaagcttacgacaacatcgtcgcggagcggcgctcctccattctc
acggaaactctccggagggtctcggtcgacgaaaccgccggattccgaggcccagaagcc
cttcgccagtcgttccagcacgcaccaccccagagtcacaacggtgtcgacggatacccg
gagaaacgcaaacagtctctcatcctgaatcccattgcagctgctcgtaaaatctccttc
atagggaactcccagcagatgggcacgctgccgccgtcactcatggaggagggtgtcaac
gaactttcagacaggagattctccgtggtgccagaggatgatcaagtggaggaggtactt
ccgaggagtaacctgtaccaccacgggctgcagcacctcggcggacagcggcgccagtcc
gtcctggccttcatcaccaatgctcagggccaagaccgcagggacaagatgcagtcgtcg
ttcagaaagaagctgtccgtcacaccgcagtacgacctggcgacggagctggacatctac
gcacgccgcctgtccaaggacagcgtgtttgaaatcactgaggaggtggatgaagaagac
atggagcaatgctttgcagatgagcgtgagaacgtctttgtgacgacctcgtggagcact
tacctccgctatgtttccgtcaacagaaccttgatttatgtccttattttcattgctatt
gtttttgccattgaggtggctggatcagtcattggtatttttctcataacagataaagtc
tggagagatggtgccaacccaaactcacccaactacatcgacgatcagcccatcaattcc
tcgtcccccccggtccacctggctgtcattgtgacaccgaccagtgcctattacatcatc
tacatcttcgtggcccattcagacagcatactggccctcggagtcttcaggggtcttcct
ctggtgcactcattactcaccgtttctgaaagacttcacgagcagatgctgagcgctgtg
ctgcgcgcccccatgtccgtgctcaattccatcaaaacagcccggataatgaacagattt
accaaggacatggccattattgaagacatgctgcctcccatgctttttgacctcatacag
ttaacactactggtcatcggatgcatcttcaccgtgtccatcatgcggccctacatcttc
atcgctgccattcccctggctgtcatctttgttgccctcaggaagtattacctacgaaca
ggacagcaactcaaacagctggaagctgaagcagctcgcacccccatcttctctcacctc
gtactctcactgaagggtttatggaccatccgtgcatttggccgtcagacttactttgag
acgctcttccacaaggctctgaacacccacacagccacctggttccactacctgtctgcc
ctgagatggttcctcttccgttgtgatgtgctcttcgtactcttcttcactgctgccgcc
ttcattgctgttggaaccaaccaggaccggccaggggagataggaatcatcgtggctctg
gccatgcttattttggggacgttccaatgggctatcatcaccagcatcaatgtggacgga
ctgatgcgttcagtggaccgagtcttcaaattcatcgaccttccgtcagaggacatgccg
acggggaaacctgggggcaggcaaggctctgatctcgtcatcgacaaccctcacgcccag
atacactggcccaaccgcggccagctggacgtcaagggcctcactgtcacatacacagag
acgggacatcccgtcctcagtaacatctccttctcggtggatggaggccagagtgtgggc
ttgctgggtcggaccggttccggaaagagtaccctgctgtccgcgctgctgcggctggcc
tgcaccgagggggagatgtccatcgatggcgtttcgtccagctccgtctccattcagacg
tggagaaaggccttcggagtggtgcctcagagaattttcattctgacgggaactttccgg
atgaatctggacccgtacggacggtacagcgatgaggacctgtggagggtggctgaggag
gttggtttaaagtcagtgatcgagcagtttcctgacaagctggatttccatctggtggat
ggaggcagcgtactgagcaacggccacaaacagctgatctgcctggcccgctccatcctg
agccgggcccgcatcctcctgctggatgagccgtctgcttacctcgaccccataactctg
gtggtcctgaggaagaccctaaagcagtccttctccagctgcaccgtcatcctatcagag
cacaaagtggagcctctgctagagtgccagtcgttcctgatggtcgagaatggtgccttg
aaaaactacgagtcccttcagaaactcatgagtgaggtgacccacctgagacaggccatg
agcccggcggaccagcaccgcttcccaatgctccaccgtctcaactccaccaagagggcc
ctgccaccgaccaccaagatctcctcactgccagaggaagctgaggatgaagttcaggac
actcgactctga
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integrated database retrieval system
