Oryzias melastigma (Indian medaka): 112139213
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Entry
112139213 CDS
T07439
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oml03021
]
112139213 (chd1)
03036 Chromosome and associated proteins [BR:
oml03036
]
112139213 (chd1)
Transcription machinery [BR:
oml03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
112139213 (chd1)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
112139213 (chd1)
SLIK complex
112139213 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CHD1-like_C
CDH1_2_SANT_HL1
Helicase_C
Chromo
HDA2-3
CHDCT2
Motif
Other DBs
NCBI-GeneID:
112139213
NCBI-ProteinID:
XP_024117710
Ensembl:
ENSOMEG00000007012
UniProt:
A0A3B3BL27
LinkDB
All DBs
Position
LG12:26652729..26682270
Genome browser
AA seq
1768 aa
AA seq
DB search
MAGRSEDESVSNSSGGSSNSDDDSGSRSGSASGSGSSSSSSSSSSQSDSSDSGSGSDSDS
QSDSETGVSNEKTEPQNKSNIDGAEFWKSNPSILAVQRSAMLRKQQQQQQQRRASSNSGS
DEDSSSSDDSSSSGSRRRRHSGSSDSGSGSGSGSDSGSDSSAEDNSNETTSDYEPSHAFK
GRKPPNKVNSRNGKKSTVQRKKIQKHSSSDDEHDDYIKAASAGPRRQATVNISYKEDEEL
KTDSDDLLEVLGEDVPQLEEEEFETIERVMDSRIGRKRATGSVTTVYAVEADGDPNANFN
PNKEAGDVQYLIKWKNWAHIHNTWETEETLKQQNVRGMKKLDNFKKKDQEQKKWLKSASP
EDIEYFNCQEELIDDLHSQYQLVERIIGHSNQKSAAGYPDYLCKWQGLPYSECSWEDGAL
IAKKFQKRIDDYMSRNQSKTIPSRDCKVLKQRPRFVPMKRQPSYIGGDGLELRDYQLDSL
NWMAHSWSKGNSCILADEMGLGKTIQTICFLNYLFHEHQLYGPFLLVVPLSTVTSWQREI
QLWAPQMNVVVYLGDINSRNMIRTHEWIHLHSRRLKFNILLTTYEILLKDKTFLGSVNWA
FIGVDEAHRLKNDDSLLYKTMIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPDKFHSWE
HFEAEHGKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMTAIQKQYYKWI
LTRNYKALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPEDEFLSKAETLQLLIRSSGKL
VLLDKLLVRLKERGHRVLIFSQMVRMLDILADYLRSRQFLFQRLDGSIKGEMRKQALDHF
NAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKRQVNIY
RLVTRGSVEEDIIERAKKKMVLDHLVIQRMDTTGKTVLNTGAAPSSSAPFNKEELSAILK
FGAEELFKEPEGEEQEPQEMDIDEILKRAETRENDPGPSTVGEELLSQFKVANFSMMDDE
EIDIDSERSQRSWDDIIPEEQRRRMEEEERQKELEEIYMLPRMRNCAKQISFNSGERRHG
RSRRYSGSDSDSLSDRKRPKKRGRPRTIPRENIKGFSDAEIRRFVKSYKKFGGPLERLDA
IARDAELVDKSEHDLKRLAETVHNGCLRTLRENPCGPEKTSGGRRGKVKGPTFRISGVQV
NAKLVISHEEELAPLHKAIPADPEERKKYVLPCHSKAAHFDIEWGKQDDSSLLIGIYEYG
YGSWEMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLARKEAQKQAVTA
NSRKRKPRNKKSKTPKVVKAEEVTKSPSSDPPSEKASDDEEDADEEKETLLKSRRSRTDK
LLMDEDEEEEEDEEEEEEEEDRDGSSSGERESREEIKKEEESCEIKDAKESKEKKESKAV
EVIHKHEENDVKTEQRDRPKKASDTPVHVTAGENIGEESEELDQRTFSVCKERMRPVKAA
LKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYSNPEQIKQWRKNLWIFVSKFTE
FDARKLHKLYKHAIKKRQESAQAAEQNTRTANTHSFKHADVERLKDGSHHDDSSRDSYSS
DRHPPAPRHHDGGGSKERHAAESHRKSSLTESRKRPYTYFSNGKDHRDRDHYRPDSRDRD
RYYSEGKHRKMEDSRSGRDHRLDLKDGSHSDHYPSQRYHSDWQAEQRASASGTRSPYDSR
SPMGHRSPFDYSSDHRSTPEQIWSSRKT
NT seq
5307 nt
NT seq
+upstream
nt +downstream
nt
atggcaggacgcagtgaggatgaaagtgtcagcaacagcagtggggggtccagcaactca
gacgatgactctggttctcggtccggctcggcctccggttctggctccagttccagttct
tctagcagcagcagccagtcagacagcagcgactcaggaagcggctccgattccgacagt
cagtcggactctgaaacaggagtgtccaatgagaagacggaaccgcagaacaagtcaaac
attgacggagcagagttctggaagtccaacccgagcatcctggcggtgcagagatctgct
atgctccggaagcagcagcagcagcagcagcagagacgagcctcctcaaacagcggatca
gacgaggactcctccagcagtgacgactcctcctccagcggctccaggaggagaagacac
tcgggctcctcagactctgggtcgggctctggatcaggaagtgattctgggtccgattcc
tcagcagaagacaacagtaatgaaaccacgtcggactatgagcccagccacgcattcaaa
ggcagaaagcctcccaacaaagtgaattcccggaacggaaagaaaagtaccgtccagaga
aagaagatccagaagcattcatcctctgacgatgaacatgacgactacatcaaggcggcg
tccgctggcccccggcggcaggccaccgtcaacattagctacaaggaggacgaggagctg
aagacggactctgacgatttgttggaagttctgggtgaagatgtgcctcagctggaggag
gaagagtttgaaaccatcgagcgagtgatggacagcaggatagggagaaaacgagctacg
ggcagtgtgaccacggtgtacgccgtggaggcagacggcgaccccaacgctaacttcaac
cccaacaaagaggccggcgacgtccagtacctgatcaagtggaagaactgggctcacatc
cacaacacgtgggagacggaggagacgctgaagcagcagaacgtcaggggcatgaagaag
ctggacaacttcaagaagaaggatcaggagcaaaagaaatggttgaagtcggcttcacca
gaagatatcgagtatttcaactgtcaggaggagctgatagacgacctgcactctcagtac
cagctggtggagcgaatcatcggacattcaaaccagaagtctgcggccggttacccggat
tacttgtgcaagtggcagggcctgccgtactcggagtgcagctgggaggacggcgccctg
attgccaagaagttccagaaacgcatcgacgactacatgagcagaaaccagtccaagacc
attccctccagagactgcaaggttctgaagcagaggcccaggtttgtgcccatgaagagg
cagccatcttacatcgggggggacggtctggagctccgagactaccagctggacagttta
aactggatggcccactcatggagcaaggggaacagctgcatcctggcagacgagatgggt
ttggggaagaccatccagaccatctgcttcctcaactacctgttccatgagcaccagctg
tacggacccttcctgctggtggtgccgctctccaccgttacgtcctggcagagggagatc
cagctgtgggcgccgcagatgaacgtggtcgtctacctgggagacatcaacagcaggaat
atgatccggacgcacgagtggatccatcttcacagcaggaggctgaagttcaacatcctc
ctcacaacctatgagatcctcctcaaggacaagacatttctaggcagcgtcaactgggcc
tttatcggcgtggatgaggcgcaccgactgaagaacgacgactcgcttctgtacaagact
atgatcgacttcaagtccaaccaccggcttctgatcacagggacgccgctgcagaactcc
ttgaaggagctgtggtccttactgcacttcatcatgccagacaagtttcactcctgggag
cattttgaggccgagcacgggaagggcagggactccggctacaccagcctccacaaagag
ctggagcccttcctgctgcgccgcgtcaagaaggacgtggagaagtctctgccagccaag
gtggagcagatcctccgagtggagatgaccgccatccagaagcagtattacaaatggatc
ctgaccaggaactacaaggctctgagcaaaggcaccaaaggcagcacgtcgggcttcctg
aacatcatgatggagctgaagaagtgctgcaaccactgctacctcatcaagcctccagaa
gacgagttcctgagcaaggcggagactttacagctgctgatccgcagcagtgggaagttg
gttcttctggacaagttgctggtgcgcctaaaggagagaggccaccgagtcctgatcttc
tcccagatggttcggatgctggacattctggctgattacctgcggagccggcagttcctc
ttccagaggttagacggctccatcaaaggggaaatgcggaagcaggcgctggatcatttt
aatgcggagggatcagaggacttctgcttcctgttatccacacgcgctggcggtctggga
atcaacctggcgtccgctgacactgtggtcatcttcgactctgactggaaccctcagaac
gacctgcaggctcaggccagagcccaccggatcggccagaagagacaggtgaacatctac
cgtctggtgaccagaggctcagtggaggaggacattatcgagcgggccaagaagaagatg
gttctggaccaccttgtcattcagagaatggacaccacgggaaagaccgtcctaaacacc
ggcgccgccccctccagttcagcaccgttcaacaaggaggagctgtctgccatcctgaag
tttggcgctgaggagctcttcaaagagccggagggggaggagcaggagcctcaggaaatg
gacattgatgagatcctgaagagggcggagacccgagagaacgaccccggaccgtccacg
gtgggggaggagctgctgtcccaattcaaggtggctaacttctccatgatggacgacgag
gagatcgacatcgactctgagcgaagtcagcgcagctgggacgacatcattcctgaggag
cagcggaggaggatggaggaggaggagaggcagaaggagctggaggaaatctacatgttg
ccccgcatgaggaactgtgccaagcagatcagttttaactctggtgagcgccggcacggc
cgcagcaggaggtactccggctccgacagcgactccctctcagaccgtaagaggccgaag
aagcgcgggcgacctcgtaccatcccgcgagaaaacatcaaaggtttcagcgacgcagag
atccgcaggtttgtcaagagctacaagaagtttggagggcctttagagaggctggacgcc
atcgctcgggatgccgagctggttgataaatccgaacacgacctgaaacgattggcagag
acggtccacaatgggtgtctgaggacgctgcgggaaaacccttgtggacccgagaagacc
tcaggaggacgacgagggaaggtgaagggccccaccttcaggatctctggagtccaggtc
aacgctaagctggtcatctcccatgaggaggagctggcgccgctccacaaagccattcct
gctgatcccgaggagagaaagaagtacgtgctgccctgccactcgaaggcggcgcacttc
gacatcgagtgggggaagcaggacgactccagcctcctcatcgggatctacgagtacgga
tacggcagctgggagatgatcaagatggaccccgacctgaacctcacacacaaactgctt
ccagatgatccagacaagaagccccaggccaagcagctgcagacccgagccgactacctc
atcaaactactgagcaaggacctggccaggaaggaggcgcagaagcaggcggtgacggct
aactcgcgcaagaggaaaccacggaacaagaagagcaaaactccgaaggtggtgaaggcg
gaggaggtgacgaagagcccctcctctgaccccccctcagagaaggcgtcggacgatgag
gaggacgccgatgaggagaaggagacgctgctgaagagccgacggagccggaccgataag
ctgctgatggatgaagacgaagaggaggaggaggacgaggaggaggaagaagaggaggag
gaccgggacggctcttcatcgggggagcgagaaagcagagaggagataaagaaggaggag
gaaagctgtgaaatcaaagacgccaaggagtcaaaggagaagaaggagagcaaagctgtg
gaggtgatccacaaacatgaggagaatgacgtgaagacggagcagcgagatcgacccaag
aaagcctctgacacgcccgtgcacgtgacagccggagagaacatcggggaggagtctgag
gagctggaccagaggaccttcagcgtgtgtaaggagaggatgcggccggtgaaggcggcg
ctgaagcagctggaccgtccggagaagggcctgtctgagcgcgagcagctggagcacacc
cggcagtgcctgatcaagatcggagaccacatcaccgagtgtctgaaggagtactccaac
ccagagcagatcaagcagtggaggaaaaacttgtggatttttgtctccaagttcaccgag
ttcgatgccagaaagctgcataaactgtataagcacgccatcaagaagaggcaggagagc
gcgcaggcggccgagcagaacactagaactgcaaacactcacagcttcaagcacgcagac
gtggagaggctgaaggacggctcgcaccacgacgacagcagcagagacagctacagctcg
gacaggcacccgccggctccccgccaccacgacggcggcggcagcaaggagcggcacgcc
gccgagtcccaccggaagagctcgctcacagagtccaggaaaaggccgtacacctacttc
agcaacggcaaagaccaccgagaccgagaccactacagaccagacagcagggacagagac
aggtattacagtgaaggcaaacacaggaagatggaggactcgcgctccggcagagaccac
cggctggacctgaaggacggctcgcactcggaccactacccttcgcagcgctaccactcg
gactggcaggcggagcagcgggcctcggccagcgggacccgctctccctacgactcccgc
tcccccatgggccaccgctcgccgttcgattactcgtcggaccaccggagcacaccggag
cagatctggagcagccgcaagacatag
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integrated database retrieval system
