Oryzias melastigma (Indian medaka): 112139218
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Entry
112139218 CDS
T07439
Symbol
cdhr5b
Name
(RefSeq) cadherin-related family member 5 isoform X1
KO
K16505
cadherin-related family member 5
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
oml04515
]
112139218 (cdhr5b)
Cell adhesion molecules [BR:
oml04515
]
Cadherins
Cadherin related
112139218 (cdhr5b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
TFCD_C
TarH
Spore-coat_CotZ
Syndecan
Motif
Other DBs
NCBI-GeneID:
112139218
NCBI-ProteinID:
XP_024117713
Ensembl:
ENSOMEG00000006606
LinkDB
All DBs
Position
LG6:6292720..6306126
Genome browser
AA seq
713 aa
AA seq
DB search
MDGTSRFALVTVFSLWFFILSLESSEAADICSVPSSPINFPENNEVDDVVTTITVEAGVT
LALKSPSDPDYPFRLDGNQLRAARVLDYETTSSYAVEILCTKTETGLLFPLNIVVLLENM
NDNPPVFDQTLYQKEITELSPIGSAVGRFAATDLDQHSRLYYTLTSEPTGFILQSPTNPE
ILVDAHLDYDTVKEYQLKLEVQDTDFASAPDGPSFSATTTIQITLSDGDNRPPWFQPCTK
YVVGRAVICESAGYTGRVNLNEQETGVLSLKPGPVNAIDGDTGINEEITYGFLSGNDDGL
FAINPSTGDITMLRSADVLGEVNLLVMAAQKNNVDQFATTQVVISVQVKSLHVPQFQKPL
YEGLITSMGSVAVDQDKKALQILATDEDYAGVQGINPYITYSVEENNDFVIVNGFLFLIN
DVEDNTFHLTVVAKDTTNDETATAQLVMEVKIGISTSALPQSTTDIPTTTPGVNVNTVPP
GGFRVGDMAALGATLGVLLLVCLVVIGVLFHRMKKDKGNWRKIYEASMFRSSLGNGPSDP
KEAIQYTNEAFQRDEGGDGVDSGGPAGGLNAKADERPAQGSHYDKIISARLQSLQAQDTS
DTDSHKADSEKEVKPILTKERRGEDGYKSVWFKEDIDPNAKEEVVIIPDNNEHDSEEEDN
KPRIRDDDDDEEEGTSYKRKVGFADADLDSGLGVKIGDPGEDSESDRASNTSL
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atggacggcacttcgcgattcgctttggtcacagtcttcagtttgtggttcttcattttg
tctttggagtcctctgaagctgctgatatttgttcagttccttctagccccatcaatttt
ccagaaaacaacgaagtggatgacgttgtgacaacaatcaccgtcgaggcaggagtgaca
ctcgccttaaagtcaccttcagacccagattacccatttagactcgatggaaaccagttg
agagctgctagagttctggactacgagacaacctcgagctatgcagtcgagattttatgc
acaaagacagaaacaggtcttctgtttccgcttaacatcgttgtccttctggaaaacatg
aatgacaaccccccagtctttgaccagactctgtatcaaaaggagatcactgagctgtct
cccataggctccgctgtgggtcgttttgctgccacagacctcgaccagcactcgaggctc
tactacaccctgacatctgaacctactggatttatactgcaatcccctacaaacccggaa
atcttggtggatgcacatcttgactatgatacagttaaagaataccagctgaagctggaa
gttcaggacacagactttgcttcggcacctgacgggccttcgttcagtgccaccacgacc
atacagatcaccttatccgatggagataacagacccccctggtttcagccctgcacaaag
tatgttgtgggcagagctgtgatttgtgaaagtgcaggatacactggaagggtcaaccta
aatgagcaggagactggagtgttatctttgaaaccaggaccagtaaacgccatcgacgga
gacactggaataaatgaggagataacatatggattcctgagtgggaatgatgatggtctg
tttgcaatcaacccaagcacaggtgacatcacaatgctgaggtcagctgacgtactcggg
gaagtaaacctgctagtcatggctgctcagaagaataacgtggatcagttcgccaccacc
caggtggtgatcagtgttcaggtgaagagcctgcatgtaccacagtttcaaaagcctctt
tatgaaggcctcatcacatcaatgggctcagtggcagtagaccaggacaaaaaggctcta
cagatcctggctacagatgaagactatgctggcgtgcagggtataaatccttacatcacg
tattcagttgaagaaaacaatgactttgtcatcgtcaatggattcttgttcctgatcaat
gatgttgaggataacacctttcatttgactgttgtggcaaaagacacaacaaatgatgaa
acagcgacggcacagctggtcatggaggttaaaataggtatctccaccagcgctttgcct
cagagcactacagacataccgacaacaaccccaggagtcaacgtcaacaccgtccctcct
ggaggcttcagagtgggggacatggcagcactcggtgcaaccttgggggtccttctcttg
gtgtgtctggttgtgattggggttcttttccatcgcatgaaaaaggataaaggcaactgg
aggaaaatctatgaggccagcatgttcaggagctcactgggaaacggcccgagcgacccg
aaagaggccatccagtacaccaatgaagccttccagagggatgagggtggagacggcgtg
gactccggtgggccagcggggggtctgaacgcgaaggctgacgaacgaccagcccagggc
tctcattatgacaagatcatttctgcacgtctgcaaagcctgcaggcacaggacaccagt
gacacggactcccacaaggccgacagtgagaaggaggtcaaacccatcctgaccaaggag
aggcgcggggaggacggctacaagtcagtgtggtttaaggaggacattgaccccaatgcc
aaagaggaggtggtcatcatcccagacaacaacgagcatgacagcgaggaggaagacaat
aaacccaggatcagggatgatgatgatgatgaagaagagggcacttcttacaagaggaag
gtgggctttgctgatgctgatttggacagtggactgggggtgaagataggggatccaggc
gaggactcagagagcgacagagcatccaacactagtctgtaa
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