Oryzias melastigma (Indian medaka): 112139388
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Entry
112139388 CDS
T07439
Name
(RefSeq) short transient receptor potential channel 2
KO
K04965
transient receptor potential cation channel subfamily C member 2
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
oml04040
]
112139388
Ion channels [BR:
oml04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
112139388
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
PKD_channel
Ank_2
Motif
Other DBs
NCBI-GeneID:
112139388
NCBI-ProteinID:
XP_024117944
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Position
LG14:12213561..12220797
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AA seq
1010 aa
AA seq
DB search
MENLTPEQWREIMNKKMRFPPQLINAIQEGKIGLLSGLLKTGDGIIRQLDESEDRQWREA
LNLSIRLGNEDAMDALLHGVKFDFRQIHEALLVAVDTNQPLVVKRLLDRLDQEKGNKMDV
RSFSQAIFDRSIDNSQFAPGVTPLTLACQKDLYDIVTMLTQKGHVIPYPHKISCACLECR
NGRQYDLLKFSLSRINTYRGIASRAYLSITSEDAMLSAFSLSRELRKLSQKEPEFKPQYL
SLEQLCQEFAFELLGMCRNQSEVTTILNSCGDETQEALNEQAFEEGIPNLSRLRLAVNYN
QKQFVAHPICQQVLSSIWCGNLSGWRGSRTAWKLLVSVGIFLTMPLLCLVYWIAPKSKVG
KILKIPVIKFLLHAASYLWFLITLLGESITMEMYRDKFASRHQDILHSSFHMVWVVGFFW
YECKEVWIEGLRSYFLDWWNCLDMVVLSMYLASFTLRVVIMLKGYFLCHDESNSEQCIYF
TQTVRDNWHQEDPQLISEVLFAVTSMLSFTRLAYILPAHESLGTLQISIGKMIDDMMRFM
FILMIIGTAFLCGINNVYVPYVISPHLGRFNETFNFLFWTMFGVANQDFVDMPQFVLAEF
VGRILYGIFTLVIVIVLLNMLIAMITNSFQKIEDDADVEWKFARSKLYLSYFREGLTMPV
PFNIIPSPKAVFYILRGIFRRICCCCTCSSEQKYPPIDSMPSDRRSEDSQTPYRQQVIRA
LVQRYIESARREFEETKRKDIGNRITELSKAVSRMHSDMKVFQQLLLSDRPAASEALNND
GSSVLGKYIIGAKNNFRGFNSRQDDKNTSLKVTVHNGEEGGGKEKAESEAEESEAQPVDE
CREVGAVQEKDCEVVKMEEGRAKEEGSLTGQQAGSGKNENGKDQEEVAERVSCPTVEEEG
NGGAKEPEKPLEVIPEHTESTTISCETKDTREIMRKFKDLELRDKQVKAELVKGKKVENG
VAEKLHARSSGEKPGDIKMTPSPTGSSSSQDTGFGSREAEGSIDGSAVKT
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatctcacgccggaacaatggcgcgagatcatgaacaagaagatgcgcttccct
ccccagctcatcaacgccatccaagaagggaaaatagggctgctgagtgggttgctgaag
acgggtgacggcatcatccgtcagctggacgaatctgaagaccgccagtggagggaggct
ctaaacctctccatccgcttggggaatgaggacgccatggatgctctcctgcacggggtc
aagtttgacttccggcagattcatgaagctctgctggttgctgttgacaccaaccagccc
ctggtggtgaagcgtctgctggaccgtctggaccaggagaaaggcaacaagatggacgtg
cgatccttctctcaagccattttcgaccgctctattgacaactctcagtttgctcctggt
gtgactccactgacgttggcctgccagaaagatctgtatgacatagttaccatgctcacc
caaaaaggccacgtcattccatatccacacaagatatcctgcgcttgtctggagtgccgc
aatggccgacagtatgacctgctgaagttctctttgtctcgcatcaacacctatcgtggc
atcgccagccgtgcatacctgtctataacctctgaggatgccatgctcagtgctttcagt
ctcagccgagagctccgcaaactgtcccagaaagagcctgagttcaagcctcagtacctc
agcctggagcaactgtgtcaggagtttgcgtttgaactgctcggcatgtgtcgcaatcag
agtgaggtgaccactatcttgaacagttgcggagatgagacccaggaggctttaaatgag
caggcctttgaggagggaataccgaacctgtcccgcctgcggctcgcagtcaactataac
cagaagcagtttgtggcacacccaatttgccagcaggttctgtcatctatctggtgtgga
aacttatctggatggagaggcagcaggacggcgtggaagcttctagtctccgtggggatt
tttctcaccatgccacttctttgtcttgtttactggatagcaccaaagtctaaggtagga
aagatcctaaagatcccagtgatcaaattccttcttcatgctgcatcatatctgtggttc
ctcattacactacttggggaatcgataaccatggagatgtatcgagataaatttgcctcc
agacaccaggacattctgcatagctccttccacatggtgtgggtagtcggattcttctgg
tatgagtgcaaagaagtgtggattgaagggttgcggagctatttcctggactggtggaac
tgcctggacatggtggtgctcagcatgtacctggcatcctttacgctgcgcgtggtcatc
atgctcaaaggctacttcctctgccacgatgagagcaacagcgaacagtgcatctacttc
acccaaaccgtgcgagacaactggcaccaggaggacccccagctgatttccgaggtgctg
ttcgccgtgacgagcatgctgagctttacccgtctggcttacatcctgccagcccacgag
tctctgggaacgcttcagatctccataggaaagatgattgatgacatgatgagattcatg
tttatactcatgattattggaacggcattcctctgtggcatcaacaatgtctacgttcct
tatgtcatctctccccatcttggcaggtttaatgagactttcaacttcttattctggacc
atgttcggtgtggccaaccaggactttgtggacatgccgcagtttgtgttggcagagttt
gtggggaggattttatacggcatcttcactctcgtcatcgtcatcgtcctcctcaacatg
ctcattgctatgattacaaactcgtttcagaaaattgaggatgatgcagacgttgagtgg
aagttcgccagatcaaagctgtatctcagttacttcagggagggcctcaccatgccagtg
cccttcaacatcattccttcacccaaagctgtgttctacatactaaggggtatattcaga
cgaatctgctgctgctgcacttgttcttcagagcaaaaatatcctcctatcgactccatg
cccagtgacaggaggtctgaggacagccagacgccgtatcggcagcaggtgatccgggca
ttggtgcagcgctacatcgagtctgctcgcagagagtttgaggagaccaagaggaaagat
attggtaatcggattaccgagctgagcaaagctgtgtccaggatgcacagtgatatgaaa
gttttccagcagctcctcctgtctgatcgtcccgctgccagcgaggccctgaataacgat
ggctcctctgtgctcggaaaatacataattggtgccaagaataattttagaggttttaac
agcagacaagatgacaaaaacacatcacttaaagtgacggtgcataatggagaggaaggg
ggaggtaaagaaaaagctgagtcagaagctgaggagtctgaagctcagccggtggatgaa
tgcagagaagtgggagccgtgcaggagaaagactgcgaggtggtgaaaatggaggaagga
cgagctaaagaggagggcagcttgacagggcagcaggcaggatcaggcaaaaatgaaaat
ggcaaggaccaagaggaggttgcagaaagagtcagttgtcccactgttgaagaagagggt
aacggtggagcaaaggagccagaaaaacctttagaggtaatccccgagcacacagagagc
accacaatcagctgtgaaacaaaagacaccagggagatcatgaggaagttcaaagacctg
gagctgagggacaaacaagtgaaggcagaattagttaaaggcaaaaaggttgagaatgga
gtagcagaaaagctgcatgctaggagcagcggagaaaaacctggagatatcaaaatgaca
ccatctcctactgggagcagcagctcgcaggatacaggctttggttcacgggaggccgaa
gggtcgattgatggttcagctgtgaaaacttaa
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