Oryzias melastigma (Indian medaka): 112139452
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Entry
112139452 CDS
T07439
Symbol
abca4b
Name
(RefSeq) retinal-specific phospholipid-transporting ATPase ABCA4
KO
K05644
ATP-binding cassette, subfamily A (ABC1), member 4
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
112139452 (abca4b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
oml02000
]
112139452 (abca4b)
Transporters [BR:
oml02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
112139452 (abca4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_23
Motif
Other DBs
NCBI-GeneID:
112139452
NCBI-ProteinID:
XP_024118032
LinkDB
All DBs
Position
LG17:complement(2097280..2127604)
Genome browser
AA seq
2312 aa
AA seq
DB search
MKTGSQIRLLLWKNWTLRRRQKKRLLVEIFWPVLLFIGLVWLRKANPLYQQHECHFPNKA
MPSAGILPWIQGIFCNANNPCFRYPTGGESAGVVSNYNNSVLARFYVDIQELLLNQTDIQ
NFGRLWRELTSFSDFMDVLRRNPSAVSGRGLRVEDILKDDEVLTAYLLRDVGLSESILYQ
LLNAKLRLEQFAFGVPNLQLKDIACSQAQLERFIIFPSRMGLHGVRNAMCALSQQRLQRI
EDVLYANLDFFKIFKLMPQVLHSGSPGIDLHFWGQVLRTASDKIQTLMERDSSQEFLKAV
SPFFQAGGPSSFTQLMSSVSGLFCGYPEGGGSRVLSFNWYEDNNYKVFLGVNGSKKHDYV
YDDTATPFCNALMQTLESNPVTRIMWSAVKPLLMGKILYAPDSPAARKIMKSANTTFEQL
ERLQNMAKAWQEVGPQLQAFFNHSVQMNMIRDTLANPTVMHFLDTRLAETEFSTKDILRF
LSSREDEDGESGASSFTWRNIFSLIDQVIHLFNQYGECVSLDKFVAYTDESQMTHQALHL
LEENKFWAGVVFMDMFPWTSSVPPHVTYKIRMDVDAVERTNKIKDRYWDPGPRADPVEDQ
RYIWGGFSYLQDMIEHGIIKLHTGNDWPLGVYVQQMPYPCYVDDLFMITLNRCFPMFMVL
AWIYSVSMTVKSIVLEKELRLRETLKAMGVDSGVIWYTWFIDSFLMMTASTALLTAIVMG
GKVLNYSDPVLVFFFLLTFTVATIMQCFLMSVFFSKANLAAACSGIIYFTLYLPHILCFA
WQDRITKNMKLAASLLSPVAFGFGTEYLSRYEEQGLGLQWNNIQTSPLEKDSYSFSTSIL
MMTLDAVLYAVLAWYLDNVFPGQYGIGRPFYFPLQPSYWTRPAPPTTQTPQAGPAEAELE
NQPKEEENRDTPETCNGSASRKTCKHQSRRDRLQREKEVLKQQQEEEEEEQAAQEDQLFF
EPDPPGLVLGVQIQDLVKVFGGSSRPAVNCLNINFYEGQITSFLGHNGAGKTTTMSILTG
LYPPTSGTAFINGRDIRTDMDVIRTSLGMCPQYNILFSHLTVEEHIRFYSLLKGRTEEEA
EREVEDMLVDLGLPHKRDEEAQNLSGGMQRKLSVAMAFVGGSKVVILDEPTSGVDPYSRR
SIWDLLLKYRTGRTVLLSTHHMDEADLLSDRIAIISKGQLYCCGSPLFLKNCFGVGFYLT
LVRRMKDMRKLENECDCASDCSCACSICTRYKDQSQHQCHMLDRVLEGDVESISSLIHHH
VPEAKLIETIGQELTYLLPNKGFKHRAYASLFRELEETLADMGLSSFGVSDTSLEEIFLK
VTAEGEAANNATTAEQWMLQGRNAGSKVAAGADEDHNGVNGSQPASDSSAGKGSRQVKGA
SLVLKQFYALLVKRFHHATRSQKDFLAQIVLPATFVLISLIFTLIVPPFGEYPSLTLSPW
MYGQQMTFVSNERPFDPRMKHFVERLLARPGFGTRCMQGEPLGMTCNNSISEWEEPIVPP
EVMKTFHSLEWSPRNPSPSCQCSSSKKLTMMPICPAGAGGPPPRQRLEATGDTLLDLTDR
NISDYLVKTYPSLIRTSLKSKYWVNEQRYGGLSVGGQLPVLDVDPKDIRTVFYQLGRILN
ITGGHFCVLTLRDVGTFLRFMESEFNVKVWYNNKGWHAMVAYMNVANNAILRAFLPAGHR
TEEFGITAINHPLNLTKEQLSEVTVLTTSVDAVVAICVIFAMSFIPASFVLYLIQERVTK
AKHLQFVSGVSPLVYWVANFFWDMMNYTVSTAMVVGIFMAFDKKCYTSQKNLPALVALLL
LYGWSVTPMMYPMSYVFSIPSTAYVSLSCINLFVGINSSAITFILELFENNRSLLVFNEW
LKKCLLVFPHFCLGRGLIDMAMNQAVTDVYARFGEEYSLDPFRWDFVGKNLTFMAMEGFV
YFLLNLLIQYRFFLDHWLSDHKQCPVQEEDDDVAAERKRIYDGGGKMDILQIRDLSKTYV
GRKRAAVDRICVGVPAGECFGLLGVNGAGKTTTFKMLTGDTDVSSGEASVAGYSILTQIL
DVHQNMGYCPQFDAIDELLTGMEHLYLYARLRGVPESEISRVAEWGIRKLGLTEYASCCA
GAYSGGNRRKLSTAIAMIGCPALVLLDEPTTGMDPHSRRFLWNAIMSVIQDGRAVVLTSH
SMEECEALCTRLAIMVNGTFQCLGTIQHLKYKFGDGYIVTMKVKAAKAGWPPELEPVETF
METSFPGCVQRERHYNTLQYEIASSSLARIFQLVVANKDRLSIEDYSVSQTTLDQVFVNF
AKQQSGEDEDAASPRPAGNARKDQISPAKRKR
NT seq
6939 nt
NT seq
+upstream
nt +downstream
nt
atgaagacgggctctcagatccgtttgctcctctggaagaactggactcttcgtaggaga
cagaagaaacgcctgctggttgagatcttctggccggttctgttgttcattggtctggtg
tggctgaggaaggccaaccccctgtaccagcagcatgaatgtcacttccccaacaaggcc
atgccctccgctgggatcctgccctggatccagggaatcttctgcaacgccaacaaccca
tgtttcagatatccaacaggtggagagtctgcaggcgtggtgtccaactacaacaactca
gtgttggcacggttctacgttgacattcaggagcttctgctaaaccagacagacatccag
aactttgggagactgtggcgggagctgacgtctttctcagacttcatggacgttttacgc
agaaacccttctgctgtttcaggccgtgggctgagagtagaagatattctaaaggatgat
gaggttctcacagcgtacctcctcagagatgttggtctttcagagtccatcctgtaccag
ctgctcaatgcaaagctgcgcctggaacagtttgcattcggggtcccaaaccttcagctc
aaagacatagcatgcagccaggcgcagctggagcgcttcatcatcttcccgagtcgcatg
ggactccatggagtccgcaacgccatgtgtgccctcagccagcagcggctgcagaggata
gaggacgtcctctacgctaacctggacttcttcaagatcttcaagctgatgcctcaagtt
ctgcacagtggatctcctgggatcgatctgcacttctggggccaagtcctcaggacagcg
tctgacaagatccagacactgatggagcgggacagttcccaggagttcctgaaggccgtt
tctccgttctttcaagctggaggcccttcctccttcacccagctgatgtccagtgtgtct
ggccttttctgtgggtacccagaaggggggggctccagggtcctgtccttcaactggtac
gaagacaacaactacaaggtgtttctgggagtgaacggcagcaaaaagcatgactacgtc
tacgatgacacggccactccgttctgcaacgctctcatgcagacgctggagtccaacccc
gtcaccaggatcatgtggagcgccgtcaagcccctcctgatggggaagatcttatacgct
ccagactctcctgccgcccgcaagatcatgaagagcgcaaacacaaccttcgagcagctg
gagaggctccagaatatggccaaggcctggcaggaggtgggaccccagctccaggcgttc
ttcaaccacagtgtccagatgaacatgatccgggacactttggcgaacccgacagtgatg
cacttcttggacacccgtctggcagaaacagaattcagcaccaaagacattctccgcttc
ctgagcagcagagaggacgaggacggagagtctggagccagctcgttcacctggaggaac
atcttcagtctgatcgatcaggtcattcacctgttcaaccagtatggagagtgtgtcagt
ctggataagtttgtggcctacacagacgagtcccagatgacccatcaggctttgcacctc
ctggaagagaacaagttttgggctggagtggtcttcatggacatgttcccctggaccagc
agcgtccccccacacgtcacgtacaagatccgcatggatgtggacgccgtggagcggacc
aataagatcaaggacaggtactgggaccccgggcccagagcagaccctgtggaggaccag
cgatacatctggggggggttttcttacctgcaggacatgattgaacacgggatcatcaag
ctccacacgggcaacgactggccgctcggcgtctacgtccagcagatgccgtacccgtgt
tacgtggatgacctcttcatgatcacgctgaaccgctgcttccccatgttcatggtgctg
gcctggatctactccgtctccatgaccgtgaagagcatcgttctagagaaggagctccgc
ctccgggagaccctgaaggccatgggagtggacagcggcgtcatctggtacacgtggttc
atcgacagctttctcatgatgactgccagcaccgcgctgctcaccgccatcgtcatgggt
gggaaggttctgaactacagcgacccggtcctggtcttcttcttcttgctgacgttcact
gtggcgaccatcatgcaatgcttcttaatgagcgttttcttcagcaaagccaacctggct
gccgcctgcagtggcatcatctacttcactctctacctgcctcacatcctctgcttcgcc
tggcaggaccgcatcaccaaaaacatgaaactggccgcgagcttgctgtccccagtggcc
tttggctttggtactgagtacctgtcccggtatgaggagcagggcctgggtctgcagtgg
aacaacatccagaccagccctttggagaaagactcgtattccttctccacgtccatcctc
atgatgacgttggacgctgtcctctacgccgtcctggcctggtacctggacaacgtgttc
ccaggacagtatggcatcggccggcctttctacttccctctgcagccgtcgtactggaca
cgtcctgcaccgccaaccacgcagacgccgcaggcaggtccagcggaggctgagctggag
aaccagccgaaggaggaggagaaccgagacactccagagacctgcaacggctccgccagc
aggaagacctgcaaacaccaaagcaggagagaccggctgcagcgagaaaaggaggtcctc
aagcagcagcaggaggaggaggaggaggagcaggcagctcaggaagatcagctgtttttt
gagccggacccccccggcctggttttgggggtgcaaattcaagacctggtgaaggtgttt
ggtggaagttcacgtccagccgtcaactgcctgaacatcaacttctatgaggggcagatc
acatctttcttggggcacaatggagctgggaagaccacaacaatgtcgatcctgaccggg
ctgtacccccccacgtctggcaccgccttcatcaatggcagagacatcaggacagacatg
gacgtcatccggacctctctgggaatgtgtcctcagtacaacatcctcttcagtcatctc
acggttgaggagcacatccgcttctattcgctgctgaaaggacgaacggaggaggaggcc
gagcgggaggtggaggacatgctggtggacctcggactgcctcacaagagagacgaggag
gcgcagaacctctcaggcggaatgcagaggaagctatcagtggccatggcgtttgttgga
gggtcaaaggtcgtcattctggatgagccgacttctggagtcgacccgtactccaggaga
tccatctgggacctcctgctgaaatacagaactggtcgcaccgtccttctgtccacccat
cacatggacgaggccgacctgctgagtgaccgcatcgccatcatctccaagggccagctg
tactgctgcggctccccgctcttcctcaagaactgcttcggcgtgggcttttacctaact
ctggtccgccgcatgaaagacatgaggaagctggagaatgaatgcgactgcgcctccgac
tgctcctgcgcatgctccatctgcaccagatacaaagaccagtctcagcaccagtgccac
atgctggacagggtcctggaaggggatgtggagagcatcagcagcctcatccaccaccat
gtccctgaagccaagctgatagagaccattggacaggagctgacctacctgctgcctaac
aaaggcttcaaacatcgggcctacgccagcctcttcagggagctggaggagacgctcgct
gacatgggcctgagcagctttggcgtctccgacacgtcactggaggagatattcctaaag
gttacggcagaaggagaagcagccaacaatgccaccactgcagaacagtggatgttacag
gggaggaacgctggcagcaaagtagctgcaggagcagatgaagaccacaacggcgtgaac
ggcagccagcctgcgtccgacagcagtgcaggaaaaggctccaggcaggtgaaaggagct
tccctggttctgaagcagttctacgctctgttggtgaagaggtttcaccacgccaccaga
agccagaaggacttcctggcacagatcgtccttcctgccacttttgtcctcatctctctg
atcttcaccttaattgttcctccattcggagagtatcccagtctgactctgagcccatgg
atgtatggacagcagatgaccttcgtcagcaacgagcgaccatttgaccccagaatgaag
catttcgtagaacgcctattggcccgacccggctttgggacacggtgcatgcagggggag
ccgctggggatgacctgcaataacagcatatcagagtgggaggagcctattgtcccacct
gaggtcatgaagaccttccacagtctagagtggtcccccaggaacccctccccctcttgc
cagtgcagctctagtaagaagctgaccatgatgcccatctgtcctgctggtgctggaggg
cccccaccccgccaacgacttgaggctacaggggacacccttctggacctgactgaccgg
aacatctctgactacctggtcaaaacctaccccagtctcatcagaaccagcctaaagagc
aagtactgggtgaatgagcaaagatacggaggcctctctgtaggaggacagctccccgtc
ctggacgtggaccccaaagacatccggactgtgttctatcagctgggacggatcctaaac
atcaccgggggtcacttctgcgtccttaccctgagggatgttgggactttcctacggttc
atggagagtgagttcaatgtcaaggtctggtataacaacaaaggctggcacgccatggtg
gcctacatgaacgtggccaacaatgccatcctgcgggctttccttcctgccggtcacaga
accgaggagtttggcatcaccgccattaaccatcccctgaacctcaccaaggagcagctc
tcagaggtcacggtgttgaccacatctgtggatgcagtggtggccatctgtgtcattttc
gccatgtccttcatcccggccagctttgtcctgtacctcatccaggagcgagtgaccaaa
gccaagcacctgcagttcgtcagcggcgtcagtcctctggtttactgggtggccaacttc
ttctgggacatgatgaattacactgtgagcaccgccatggtggtcggcatcttcatggca
tttgacaaaaagtgttacacatcccagaagaaccttcctgctctggtggctttgcttctt
ctgtacgggtggtcagtgacccccatgatgtaccccatgtcctacgttttcagcatccca
agcacagcatacgtgtctctgtcctgcatcaacctctttgtcggcatcaacagcagcgcc
atcacgttcatcctggaactttttgagaacaatcggtctttgctggtgttcaatgaatgg
ctgaagaaatgcctgctggtgtttcctcacttctgtctgggccgaggactgatagacatg
gcaatgaaccaggctgttaccgatgtctacgcccggtttggagaggagtactcactggac
cctttccggtgggacttcgttgggaagaacctaactttcatggccatggagggctttgtg
tacttccttctgaaccttctgatccagtatcggttcttcctggaccactggctttcagat
cacaaacagtgtcccgtccaggaggaggacgatgatgtggcagccgagaggaagaggatt
tatgacggagggggcaagatggacatcttgcagatcagagacctctccaagacgtatgtg
ggcaggaagagggcggcagtggaccgcatctgtgtgggggttcctgcaggagagtgtttc
ggtctactgggagttaacggagcgggaaagacgacgaccttcaagatgctgaccggagac
acggatgtttcctctggagaagcttctgtagccggatacagcatcctcactcagatcctg
gacgttcaccagaacatgggctactgcccgcagttcgacgccatcgacgagctcctgacc
ggaatggagcacctgtacctgtacgcccgtctccggggggttcctgagtctgagatctcc
agggtggcagagtggggcatcaggaagctggggctgacagagtacgccagctgctgtgca
ggagcgtacagcgggggcaacaggcgcaaactctccacagccattgcaatgattggctgt
ccagctctggtgctgctggatgaacccaccacagggatggacccccactcccgccgcttc
ctgtggaacgccatcatgagcgtcattcaggacggccgggccgtggtgctgacgtcacac
agcatggaagagtgcgaggccctgtgcacccggctcgccatcatggtcaacgggaccttc
cagtgtctggggaccatccagcacctcaaatacaagtttggggacggctacatcgttacc
atgaaagtcaaggcagctaaagctgggtggccccccgagctggagcccgtggagaccttc
atggagacgtcctttcccggctgcgtccagagggagcggcactacaacacgctgcagtac
gagatcgcctcctcctctctggcccggatcttccagctggtggtggccaacaaggaccgg
ctcagcatcgaagactactccgtttcccagacaacgctggaccaggtgtttgtgaacttt
gccaagcagcagagcggagaggatgaagacgccgcctcccccagaccggcggggaacgcc
aggaaagaccagatctccccagccaagaggaagcggtag
DBGET
integrated database retrieval system
