Oryzias melastigma (Indian medaka): 112139527
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Entry
112139527 CDS
T07439
Symbol
cltca
Name
(RefSeq) clathrin, heavy chain a (Hc) isoform X1
KO
K04646
clathrin heavy chain
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04142
Lysosome
oml04144
Endocytosis
oml05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
112139527 (cltca)
04142 Lysosome
112139527 (cltca)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
112139527 (cltca)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oml04131
]
112139527 (cltca)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oml04147
]
112139527 (cltca)
Membrane trafficking [BR:
oml04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
112139527 (cltca)
Exosome [BR:
oml04147
]
Exosomal proteins
Proteins found in most exosomes
112139527 (cltca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
112139527
NCBI-ProteinID:
XP_024118114
Ensembl:
ENSOMEG00000011028
LinkDB
All DBs
Position
LG14:complement(2514957..2558390)
Genome browser
AA seq
1677 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICVREKVGEQTQVVIIDLADPNT
PIRRPISADSAIMNPASKVIALKDAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV
ALVTDTAVYHWSMEGDSQPVKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAAGFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG
NQPFPKKAVDVFFPPEAQNDFPVAMQISSKHDVVFLITKYGYIHLYDLETGTCIYMNRIS
GETIFVTAPHEPTSGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRLAVRNNLAG
AEELFARKFNNLFAAGNYAEAAKVAANAPKGILRTPDTIRRFQGVPTQPGQTSPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKAVDPTLALSVY
LRANVPNKVIQCFAETGQFPKIVLYAKKVGYTPDWIFLLRNVMRINPDQGLQFSQMLVQD
EEPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAI
LGNQMFTNYDRAHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNYFGSLS
VEDSLECLRAMLSANIRQNLQICVQVASKYHEQLTTQSLIELFESFKSFEGLFYFLGSIV
NFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVVGGLLDVDCSEDVIKSLILVVRGQ
FSTDELVAEVEKRNRLKLLLPWLESRIHEGCEEPATHNALAKIYIDSNNNPERFLRENPY
YDSRVVGKYCEKRDPHLACVAYERGTCDQELINVCNENSLFKSLSRYLVRRKDPDLWASV
LLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYISRLDNYDAPDIANIAISNELFEEAFAIFKKFDVNT
SAVQVLIEHVGNLDRAYEFAERCNEPAVWSQLAKAQLQKELVKEAIDSYIKADDPSAYME
VVQAADKSGNWEDLVKFLQMARKKARESFVETELIFALAKTNRLAELEEFINGPNNAHIQ
QVGDRCYDEKMYEAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA
CVDGQEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM
NHPTDAWKEGQFKDIITKVANVELYYKAIQFYLEFKPLLLNDLLLVLSPRLDHSRAVNFF
TKVKQLPLVKPYLRSVQNHNNKSVNEALNNLFISEEDYQALRTSIDAYDNFDNISLAQRL
EKHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDIELAEELLAWFLQ
ENKRECFAACLFSCYDLLRPDVVLETSWRHNIMDFSMPYFIQVMREYLSKVDKLETSESL
RKEEEQATETQPIVYGTPQLMLTAGPSVPVAPQQPYGYGFQPGYTQPAAQPGFGYGM
NT seq
5034 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatactgcctattcgctttcaggagcacctgcagctccagaacttgggaatc
aatccggccaacatcggcttcagcacccttacgatggagtccgataagttcatctgtgtc
agggagaaagtaggtgagcagactcaagtggtgatcattgacttggccgatcccaataca
ccgatccgcaggcccatctcagctgacagcgccatcatgaacccagccagcaaagtcatc
gcacttaaagacgcggcaaaaaccctccagatctttaacattgagatgaagagcaaaatg
aaagcgcacaccatgaccgacgatgttactttctggaagtggatctccttaaacacagta
gctcttgtgactgacacggccgtctaccactggagcatggagggagactcgcagcctgtg
aaggtctttgaccgccattccagcctggcgggctgccagatcatcaactaccgcactgat
gcaaagcagaaatggctcctgctcattggcatttcagctcagcaaaatcgagtggtgggg
gccatgcagctgtactcagtagacagaaaggtttctcagcccattgaaggccacgccgca
ggttttgcgcagttcaagatggaaggaaatgcagaagagtcgactttattctgcttcgct
gtccgaggccaagctggaggaaagttgcacatcattgaagttggcactccaccaactggt
aaccagccatttcccaaaaaagccgtggatgtcttcttccctccagaagctcagaatgac
tttcctgtggccatgcagatcagttcaaagcatgatgtagtttttctcatcaccaaatac
ggctacatccacctctatgatttggagacgggaacctgcatctacatgaaccgcatcagt
ggcgagaccatctttgtcactgcaccccatgagcccacctcaggaattattggagtcaac
aggaagggacaggtgttgtctgtctgtgtggaagaggaaaacattattccatatatcacc
aacgttctgcagaatccagaccttgctctccgtttagctgttcgcaacaacctcgcagga
gctgaggagctctttgcccgcaagttcaataacttatttgctgctggcaactacgctgaa
gctgccaaagttgctgctaatgcaccaaagggaatcctgcgcacaccagacaccattcgc
cgctttcagggtgttcccactcagccaggccagacctcgcccctgctgcagtattttggt
atcctgttggaccagggccagctgaacaagttcgagtccctggagctctgcaggcctgtg
ctccagcagggaagaaagcagcttttggagaagtggctcaaagaggacaagctggagtgt
tctgaggagctgggggatctagtgaaggcagtggatcccaccttggctcttagtgtctac
ttgagggccaacgtccccaacaaggtcattcagtgctttgcagaaactggtcagttcccc
aagattgtcctgtatgcaaagaaggttggctacactccagattggatttttctgctcagg
aatgtcatgcggatcaatccagatcaaggtctgcaattttcacaaatgctggtccaagat
gaggagcctttggctgacatcacacagattgtggatgtgttcatggagtacaacctgatc
cagcaatgcacctctttccttcttgatgctctgaagaacaacagaccctcagaaggaccg
ctgcagactcgtttgttggagatgaatctcatgcatgctcctcaggttgctgatgctatc
ttaggcaaccagatgtttaccaattacgaccgtgctcacattgcccagctgtgtgagaaa
gctggactgctgcagagagcgctggaacactacacagacctgtatgacatcaagcgtgct
gtggtgcacacgcaccttctcaacccagaatggttggtgaactactttggctccctctca
gtagaagactctttggagtgcctcagggccatgctttcagcaaacatccgccagaacctg
cagatctgtgtccaggtggcctccaaataccatgaacagctgaccacgcaatccctcatt
gaactgtttgagtcctttaagagctttgaaggtttgttttacttcctgggctccattgtg
aacttcagccaggatcccgacgttcatttcaaatacattcaggctgcctgcaagacgggc
caaatcaaagaggttgaaaggatctgtcgagagagcaactgctacgacccagagcgtgtc
aagaacttccttaaggaagccaaactgactgaccagctgccgctcatcatcgtctgtgac
cgctttgactttgttcacgacctggtcctctacctgtaccgcaacaacctacagaagtac
attgagatttatgtccaaaaggtgaatcccagccgtctgcctgttgtggttggaggtctc
ttggatgtggattgctctgaggacgtcatcaaaagcctgatcttagttgtcagagggcag
ttttcgacagatgaactagttgctgaagtggaaaagagaaatcggctgaagctgctgctg
ccttggctggagtctcgcatccatgaagggtgtgaagagcctgctacccataatgccctt
gctaagatctacattgacagcaataacaaccctgagcgcttcctccgggaaaacccctac
tacgacagccgtgtggtggggaagtactgcgagaagagagaccctcatctggcctgtgtg
gcttatgagcgaggaacgtgtgaccaagagctcatcaatgtttgcaatgagaactccctc
ttcaagagtttgtctcgctacctggtcagacgcaaagaccccgatctgtgggccagtgtg
ttgctcgagagcaacccttacagacgaccactcatcgatcaggtggtgcaaacagcacta
tcagagacccaggatccagaggaggtatctgtcaccgttaaggccttcatgactgccgac
ttacccaatgagctcattgaacttctggagaagattgtgctggacaactcggtcttcagt
gaacacagaaatctgcagaacctgctgatcctgacggcgattaaagctgaccgcacccgt
gtgatggagtacatcagtaggctagacaactatgatgctcctgatattgcaaacattgcc
attagcaacgagctctttgaagaagcgtttgccatcttcaagaagtttgacgtcaacacc
tctgctgtgcaggtgctcattgagcatgttggcaacctggaccgagcatatgagtttgca
gaacgctgcaatgagccagctgtgtggagccagctggccaaggctcagctacagaaggag
ctggtcaaagaggccatcgactcctacattaaagctgatgacccatctgcttatatggag
gtggtgcaggcagctgacaagagtggtaattgggaagacttggtcaaattccttcaaatg
gctcgaaagaaggctcgtgagtctttcgtagaaacagagctgatctttgctttggccaaa
accaatcgcctggctgagctcgaggagtttatcaatggacccaacaatgctcacatccaa
caggttggtgaccgctgctatgatgagaaaatgtacgaggcggctaagctgctttacaac
aacgtgtccaactttggccgcctggcttcgacactggtacaccttggagagtaccaggct
gctgtggatggtgctcgcaaggccaacagcactcgcacctggaaggaggtgtgctttgcc
tgtgtggatggacaggagtttcgactggctcagatgtgcggcctgcacattgtggttcac
gctgacgagctggaggaactaatcaactactaccaggaccgtggctactttgaagagttg
atcaccatgctggaggctgctctcggtctggagcgagctcacatgggaatgttcacagag
ctcgccatcctttactcgaagttcaagccccaaaaaatgagggagcacctggagctcttc
tggtcccgagtcaacatcccgaaggtcctaagagcagcagagcaagctcatttgtgggct
gagctggtcttcctgtacgacaagtacgaggagtacgacaatgctatcattaccatgatg
aaccacccaacagacgcctggaaggagggccagttcaaagacatcatcaccaaagtggcc
aatgtggagctctactacaaagctattcagttctacctggagttcaagcctttgttactg
aatgacttgctcttggtgctctcacctaggctggatcactcgcgcgccgtcaactttttc
accaaggtgaaacagttgcctctggtcaagccttacctacgatctgtacagaaccacaac
aacaaatcagtcaatgaagcactcaacaacctcttcatctcagaggaagactatcaggca
ctaagaacatcaatagatgcctacgacaactttgacaacatctctttggcccaacgtttg
gagaaacacgagctgattgagttcagaagaattgctgcctacctcttcaaaggcaacaac
cgctggaaacagagcgtggagctgtgcaagaaagacaagctttacaaggatgccatgcaa
tacgcatcagagtccaaggacatcgagttggcagaggagctgcttgcctggttcctgcag
gaaaataagagagagtgttttgcagcctgcctgttctcctgctatgacctgctacggcca
gatgtggtcctggagacctcctggagacacaacatcatggacttttctatgccatacttc
atccaggtcatgagggagtatctgtccaaggttgataaacttgaaacctcagaatctctg
aggaaagaggaggagcaggcaacagagacacaacctattgtctacggaacgccgcagctg
atgctgacagcgggtcccagcgtacccgtggcccctcagcagccatacggctacggcttc
cagccaggatacactcaaccggcagctcaaccaggcttcggctacggcatgtaa
DBGET
integrated database retrieval system
