Oryzias melastigma (Indian medaka): 112139725
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Entry
112139725 CDS
T07439
Symbol
rapgef2
Name
(RefSeq) rap guanine nucleotide exchange factor 2 isoform X1
KO
K08018
Rap guanine nucleotide exchange factor 2
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04010
MAPK signaling pathway
oml04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
112139725 (rapgef2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
112139725 (rapgef2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGEF
PDZ
RasGEF_N
PDZ_6
RA
cNMP_binding
RA_2
PDZ_2
Motif
Other DBs
NCBI-GeneID:
112139725
NCBI-ProteinID:
XP_024118335
Ensembl:
ENSOMEG00000014200
LinkDB
All DBs
Position
LG10:3479858..3574982
Genome browser
AA seq
1662 aa
AA seq
DB search
MASYVDNRFRQAVMMNPAERTQQDLEIVYSYLHGMEALSNLREHQLRMMCETVRYERHEA
NEVLYYPEDIGSCWYILLSGSVFIKESMFLPRSSFGKRSAGSLRRGCECIVLEPSEMIVV
DYMDENEEYFQRQASHRQSRRRFRKINQKGERQTIIDTVDPYPTGKPPIARGYHTECSKA
QLPADFSRLHLADGLHPQVTHVSSSHSGCSITSDSGSSSLSDIYQATENEPGDMDLSGLP
ETAVDSEEDDDEEDIERASDPLMSRDIVRDCLEKDPIDRTDDDIEQLLEFMHQLPAFANM
TMSVRKQLCAVMVFAVVERAGTIVLNDGEELDSWSVILNGSVEVTYPDSRTEVLCMGNSF
GVSPTMEKEYMKGVMKTKVDDCQFVCIAQQDYCCILNQVEKNMQKVEEEGEIVMVKEHRE
LDRTGTRKGHIVIKGTPERLTMHLVEEHSVVDPTYIEDFLLTYRTFLSSPMVVGKKLLEW
FHDPSLRDKVTRVVLLWVNNHFNDFEGDPAMTRFLEEFENMLEKEKMCGHLRLLNIACAA
KAKPRLVTLTKPSRDSPLGFSLLGGQEKGSRIFIDAVEPGSKAAEVGLKRGDQILEVNGQ
NFENVQLSKASEILKNNTHLSITVKTNLLVFKELLTRPEHDHDTDVEDDHDRKNGAPHQP
KIGDIKKASRHSIPDLAVDVEQVMGLEKASKKAKANTVGGRNKLKKIFDKTLTSILPPKP
YNDVCVGQSQDDSILGMKQSKQIPPALPVSGNLSSSNPDLLQSHHRILDFNNQPVPVLLN
MSDQVLRVFKADQQSRYIMIGKDTTAKEVVVQAIREFALTAAPEAYSLCEVSVTPEGVIK
QRRLPDQLSKLADRIQLSGRYYLKSNMETETLCSDEDAQDLLREGQISLLQLSTVEVATQ
LSMRAFELFCAIEPTEYIDDLFKRRSKTGSASLKRFEEAINHETFWVATEVTREPNQLKR
MKIIKHFIKIALHCRECKNFSSMFAIISGLNLAPVSRLRGTWEKLPSKYEKLFGDLQDLF
DPSRNMAKYRNVLNNQNLQPPIIPLFPVIKKDLTFLHEGNDSKVDGLVNFEKLRMIAKEI
RHVGRMASVNMDPALMFRTRKKKWRSLGSLSQGSANAAVLDVNQTGGHKKRVRRSSFLNA
KKLYEDAQMARKVKQYLSNLSLETNEESLQTLSLQCEASISTLPKNTGGKRPDTSPVVSR
AASQQRGQLAKGNQALQVPAVALHPSRKRVPVKDLPPFGTSSPQSLKKILSLSEEGSERH
RKPPEDTVSNASSQLSSPPTSPQSSPKKGYGRIGDAYSDSGHSEISSRSSLVSNSSFDMT
QEERRLRHSGGGGEFHAGGPRMERRATTDADQYSLGSYSSMQDCRGIYAGCPTVLSSPSS
EELTQDQGDRVSLDAADSGRGSWTSCSSGSHDNIQTMQQGRSWETLILGGGSSGGGIGGL
PPGPEVLGGLGGHAALWAAQTRGSWASVSSSSSSAAYWGEDSEGDTGTIKRRGGKDVNAD
AETSSITSTGSEEAKQLCRPTPSPITAGARKEGRYREPPPTPPGYTALTMSDLSEGQHPP
PPAPTSTATHSGRRPPDYTTALQRSRMVTQSPDSHQAQQGSKHRGAGPQRTCSPAEEQEP
EEEEEEDEEEITEAVEAQMEEGYEENDQEEKELEDAPHENGS
NT seq
4989 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgtacgtggataaccgctttcgtcaggcggtgatgatgaatccggctgagagg
actcaacaggacctggagatcgtctactcctatctccatgggatggaggccttgtccaac
ctgagggaacatcagctgaggatgatgtgtgagacggtgcgttacgagaggcacgaggcc
aacgaagtgctttactaccctgaagacattggcagctgctggtacatcctgttatctggt
tcagttttcatcaaggagtccatgttcctccctagaagcagttttgggaagagatcagcc
ggcagcctgcggcgtggatgtgagtgcatcgtcctcgaaccctcagagatgattgtggtg
gactatatggacgaaaatgaggagtactttcagcgacaagcctcacacagacagtcccgc
cggcgctttcggaaaattaaccagaaaggagagaggcagacaatcatcgacacggtggat
ccgtaccccactgggaagcctcccatagcccggggttaccacacggaatgcagtaaagct
cagcttcctgcagacttcagcagacttcacctggccgacggcttacacccacaggtgacc
cacgtctcctccagccactcaggatgtagtatcaccagcgactctggaagcagcagcctg
tcagacatttaccaggccacagagaacgagcccggtgacatggacctgagcggcctgccg
gagaccgccgtcgactctgaggaggatgacgatgaggaggacatcgagcgagcgtcggac
cctctgatgagccgagacattgtgcgggactgcctggagaaggaccccatcgaccgcaca
gacgacgacatagagcaattactggagttcatgcatcagctgccagcgtttgctaacatg
accatgtcagtgaggaagcaactctgcgccgtcatggtctttgctgtggtggagcgtgcc
ggcaccatcgttctcaacgatggggaggagctggactcgtggtcggtgatcctcaacggt
tcagtggaggtgacgtaccccgacagccgaactgaagtcctgtgtatgggcaacagcttc
ggggtgtcccccaccatggagaaggagtacatgaaaggtgtcatgaagaccaaggtggac
gactgccagtttgtgtgcatagcccagcaggactactgctgcatcctcaaccaggtagag
aagaacatgcagaaggttgaggaagaaggagagatcgttatggtgaaggagcaccgggaa
ctggaccgcaccggcaccaggaagggtcacatcgtcatcaagggcacacctgaacgcctc
accatgcacctggtggaggagcattcagtggtggaccccacctacatcgaagacttcctg
ctgacctacaggaccttcctctccagccccatggtcgtgggcaagaagctcctggagtgg
tttcatgaccccagtctcagggacaaggttactcgggtagttttgctgtgggtgaacaat
cacttcaacgactttgagggcgaccccgccatgacccgctttttggaggagtttgaaaac
atgctggagaaagaaaaaatgtgtggacacctccgactgttaaacatagcatgtgctgct
aaagccaagccgcggctggtgacactgaccaagccgtccagggactctcctctcgggttc
agcctcctcggagggcaggagaaaggttcccgcatcttcattgatgctgtggagccgggg
agtaaggcagcagaagttggccttaaacgtggagatcagatcttggaggtcaatggacag
aattttgaaaatgtccagctcagcaaagccagtgagattctaaagaacaacacccacttg
tccataactgtgaagacaaatcttttagtgtttaaggagctgctaacgcgacctgagcac
gaccacgacacggacgtggaggacgaccacgacaggaagaacggggctccccaccagcca
aagatcggagatatcaagaaggccagccgccactccatcccagacctggcggtggacgtg
gagcaggtgatggggctggagaaagccagcaagaaggccaaagctaacacggtcggagga
cgcaacaagttaaagaagatctttgacaagacgctcaccagcatcctgccccccaaacca
tacaacgacgtttgcgtcggccaatcacaggatgacagcatattggggatgaagcagtcc
aaacagatccctcccgcgctgccggtcagtggaaacctgtcgtcctccaacccagacctc
ctgcagtcacaccaccgcatcctggacttcaacaaccagcctgtaccggtccttctgaac
atgtcagaccaagtgcttcgggttttcaaggcagaccagcagtcgcggtacatcatgatt
ggaaaggacaccacggctaaggaggtggtggtccaggccatcagggagttcgctctgact
gcagccccggaggcgtactcgctgtgtgaggtgtccgtcactccggagggagtcatcaag
cagcgccgcttacctgaccagctctcaaaactggctgacaggattcaactgagcggcaga
tactacctgaagagcaacatggagacggagacgctatgctcggacgaggacgcccaggac
ctcctacgagaaggccagatctccctgctgcagctcagcactgtggaggtggccacgcag
ctctccatgcgagctttcgagttgttctgcgccatcgagcccacagagtacatcgacgac
ctgttcaagcggcgctcgaagacgggctctgccagcctgaagcgcttcgaggaagccatc
aaccacgagaccttctgggtggccacagaggtgacgcgggagcccaaccagctcaagcgg
atgaagatcatcaagcatttcatcaagattgccctacactgccgagagtgtaagaacttc
agctccatgtttgccatcatcagcggcctgaacttagctccagtgtccagactgagggga
acatgggagaagttacccagcaagtatgagaagctgtttggggacctgcaggacctcttt
gacccgtctaggaatatggcaaagtaccggaacgttctgaacaaccagaacctccagcca
ccgatcatccctctgtttccagtcatcaagaaggatctgaccttcctgcacgaaggaaat
gactccaaagtggacggcctggtgaactttgagaagctgaggatgattgccaaagaaatc
cgccatgtgggtcggatggcttctgtcaacatggacccggcgctcatgttccggaccagg
aagaagaaatggagaagtttagggtctctcagtcagggcagtgccaacgcggcggtgctg
gacgtcaatcaaacgggcggccataagaagcgggtgcggcgcagttccttcctgaacgcc
aaaaagctttacgaggacgcgcagatggcccggaaggtcaagcagtacctgtccaacctg
agcctagaaaccaacgaggagagtctgcagacgctgtcgctgcagtgtgaagcctccatc
agcacactgcccaagaataccggcgggaagcgaccagacacttctccggtggtgtccaga
gctgcgagccagcaaagaggccagctggccaaagggaaccaggctctgcaggtccccgct
gtggccctgcacccctcccgaaagagagtgccggtcaaggatctgccaccgtttggcacc
agttcaccccagtccctgaagaagatcctgtctctgtccgaggagggaagcgagcggcac
cgcaagcccccggaggacacagtgtccaacgcttcctcccagctctcctccccccccacc
tccccacaaagctcacccaagaagggctacggccggataggagacgcctactcagactct
ggacacagtgagatctcatcccgctccagtctggtcagtaactcctccttcgacatgact
caggaggagaggaggctgcggcactccgggggagggggggagttccacgccggcggtcct
cggatggaacggagagccaccactgacgctgaccagtacagcctggggtcgtactcgtcc
atgcaggactgtcggggcatctacgccggctgccccaccgtgctgtcctcccccagctca
gaggaactgacccaggaccaaggggaccgcgtctctcttgatgctgcagacagcggccgc
ggctcctggacttcctgttcctccggctcccatgacaacatccagaccatgcagcaaggg
cgcagctgggagactctcattttgggtggaggtagcagtgggggtggcattggaggactt
ccaccaggacctgaggttttagggggcttagggggtcatgctgctctgtgggcagcacag
accagggggagctgggcgtctgtcagctcctcgtcatcctcagcggcgtactggggggag
gactcagaaggagacacaggaaccatcaagaggagaggcgggaaggacgtgaacgcagac
gcagagaccagcagcatcacctccacgggctccgaggaggccaagcagctctgccggccc
actccgtcacccatcacagcgggggcacgtaaggaaggccgttaccgggaacctccccca
actccccccggctacaccgccctgaccatgtctgatctctctgagggccagcaccctcct
ccgcctgcccccacatccacagccacccactcaggccgccgcccacctgactacaccaca
gctctgcaacgctcgcgcatggtcactcagtcccccgactcccaccaggctcagcagggc
tccaagcaccggggggccggcccccagcgcacatgctcaccggctgaggagcaggaaccc
gaggaggaggaggaggaggatgaagaggaaatcactgaagctgtggaggcgcagatggag
gaaggttatgaagagaacgatcaggaagagaaggagctggaagacgctcctcatgaaaac
ggctcgtaa
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integrated database retrieval system
