Oryzias melastigma (Indian medaka): 112139937
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Entry
112139937 CDS
T07439
Symbol
brcc3
Name
(RefSeq) lys-63-specific deubiquitinase BRCC36
KO
K11864
BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03440
Homologous recombination
oml04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112139937 (brcc3)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
112139937 (brcc3)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
oml01002
]
112139937 (brcc3)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oml04121
]
112139937 (brcc3)
03036 Chromosome and associated proteins [BR:
oml03036
]
112139937 (brcc3)
03400 DNA repair and recombination proteins [BR:
oml03400
]
112139937 (brcc3)
Peptidases and inhibitors [BR:
oml01002
]
Metallo peptidases
Family M67
112139937 (brcc3)
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
112139937 (brcc3)
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
112139937 (brcc3)
BRISC complex
112139937 (brcc3)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
BRISC complex
112139937 (brcc3)
DNA repair and recombination proteins [BR:
oml03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
112139937 (brcc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCC36_C
JAB
Prok-JAB
UPF0172
TEDC1
REP_ORF2-G2P
Motif
Other DBs
NCBI-GeneID:
112139937
NCBI-ProteinID:
XP_024118572
LinkDB
All DBs
Position
LG18:complement(3987548..3989757)
Genome browser
AA seq
260 aa
AA seq
DB search
MAVSAVHLESDAFLVCMNHALSTEKEEVMGLCIGEVEESRIVHIHSVIILRRSDKRKDRV
EISPEQLSAASTEAERLADLTGKPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMLDQGFV
GLIFSCFIEDKNTRTGRVLYTCFQSAQAQKGSEYERVEIPVHVVPREAIGRVCLESAVEL
PRILCQEEQDTYRRIHGLAHLDPVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEHNR
RSIAELQREKEALLRELAVL
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgagtgcggtccacctggagtccgacgccttcctcgtgtgcatgaaccacgcg
ctgagcacggagaaggaggaggtgatgggcctgtgcatcggggaggtggaggagtcgcgc
atcgtccacatccactccgtcatcatcctccgccgctcggacaagcggaaggacagggtg
gagatctccccggagcagctgtctgccgcctccaccgaggcggagcggctggccgatctg
accgggaagccgatgcgggtggtgggctggtaccactcccacccgcacatcaccgtgtgg
ccgtcccacgtcgacgtgcgaacccaggccatgtaccagatgctggaccagggcttcgtg
ggcctcatcttctcctgctttatcgaggacaaaaacaccaggacgggccgggtcctgtac
acctgcttccagtccgcgcaggcccagaagggctccgagtacgagcgcgtggagatcccc
gtgcacgtcgtgccccgcgaggccatcgggagggtgtgcctggagtccgccgtggagctg
ccgcggatcctgtgccaggaggagcaggacacgtaccggcggatccacggcctggcgcac
ctggaccctgtcaccaagatccacaacggctcggtgttcactaagaacctgtgcagccag
atgtccgccgtgagcgggccgctgctgcagtggctggaggaccggctggagcacaacagg
cggagcatcgcagagctgcagcgggagaaggaggccctgctgcgggagctggctgttctc
tga
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