Oryzias melastigma (Indian medaka): 112139946
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Entry
112139946 CDS
T07439
Symbol
vldlr
Name
(RefSeq) very low-density lipoprotein receptor
KO
K20053
very low-density lipoprotein receptor
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oml04131
]
112139946 (vldlr)
Membrane trafficking [BR:
oml04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
112139946 (vldlr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
Motif
Other DBs
NCBI-GeneID:
112139946
NCBI-ProteinID:
XP_024118584
Ensembl:
ENSOMEG00000009512
LinkDB
All DBs
Position
LG18:3861527..3908190
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AA seq
847 aa
AA seq
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MVTSAPGVLLPVLLAVLLCLHHRGHVHATKTECETNQFQCGNGRCIPSIWQCDGEDDCTD
GSDEKSCVKKTCAEVDFVCRNGQCVPKRWHCDGEPDCEDGSDESLEICHMRTCRVNEFSC
GAGTTQCIPVSWKCDGERDCDNGDDEINCGNITCSPSEFTCTSGRCISQNFVCNSEDDCG
DGSDEVDCAPSSCGPSEFQCGNSSCIPASWVCDDDVDCQDQSDESPTRCGRHPTPPAKCS
SSEMQCLSGECIHKKWRCDGDPDCKDGSDEANCPVRTCGPDQFKCDDGSCIPGSRQCNGL
RDCTDGSDEVDCKNLSECTGPEKFKCRSGECIDMSKVCNKVRDCPDWSDEPIKECNLNEC
LLNNGGCSHICKDMVIGFECGCTPGLQLIDHKTCGDINECMNPGICSQICINLKGGYKCE
CHNGYQMDPTTGVCKAVGKEPCLIFTNRRDIRRLGLERKEYTQIVKQQRNAVALDADFNQ
QTIFWADLGQKAIFSTVLDKRGDVETHKTVIENIQTPVGIAVDWIYRNFYWTDLGTKTIS
VSNFNGTKQKVLFNQGLIEPASIAVDPLSGFLYWSDWGEPAKIEKSGMNGVDRQVLVETD
IQWPNGITLDLIKGRLYWVDSKLHMLCSVDLNGDNRKKVLQSAEYLAHPFALTVFEDRVF
WTDGENEAIYGANKFSGSDVVTLASNLNDPQDIIVYHELIQLSGTNWCTERGVNGGCGFM
CLPAPQVNKHSPKYTCVCPEGQELAADGFRCRPEANVSTSIQVDSTARGSAGAWAILPVL
LLAMAGAGGYLMWRNWQLRNQKSMNFDNPVYLKTTEEDLNIDITRHGANVGHTYPAISIV
STEDDSS
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atggtcacgtccgcaccgggggtcctgctgccggtgctcctggcggttctgctgtgcctg
caccaccgcggtcacgtccacgctacaaagacagaatgtgaaaccaatcagtttcagtgt
ggaaatggccgctgcatcccatctatatggcagtgtgacggagaggacgactgcacggat
ggcagcgacgaaaaatcatgtgttaagaagacctgcgccgaggtggactttgtgtgtcgg
aacggtcagtgtgtcccaaagcggtggcattgtgatggagagccagactgtgaagatgga
tctgacgagagcttggaaatctgtcacatgaggacgtgccgtgtgaatgagtttagctgt
ggagccggcaccactcagtgcattcctgtctcctggaaatgtgatggagagagggactgc
gacaacggggacgacgagatcaactgtggtaacatcacctgttcccccagcgagttcacc
tgcaccagtggccgctgcatttcccagaactttgtgtgtaacagtgaggatgactgtggc
gatggctcggatgaggtggactgtgcgccgtcctcctgcggacccagcgagttccagtgt
ggaaactcgtcctgtatccctgccagctgggtgtgtgacgatgacgtggactgtcaggat
cagtccgatgagtctccgactcggtgtggccgtcacccaacacctcctgccaaatgctcc
tccagtgaaatgcagtgcctgtctggagaatgcatccacaaaaagtggcgatgtgacgga
gatcctgactgcaaggatggcagcgatgaagcaaactgtcctgtacgtacctgtgggccg
gaccagttcaaatgtgacgatggaagctgcatcccgggcagcaggcagtgcaacggcttg
agagactgcactgatggttctgatgaagtcgactgcaagaacttgtctgagtgtaccggt
ccagagaaattcaagtgccgcagtggggaatgcatagatatgagcaaagtgtgcaacaaa
gtccgggactgtcctgactggagcgatgagcccattaaggaatgcaatctgaatgagtgt
ctgctgaacaacgggggctgctctcatatctgcaaagacatggtgatcggctttgagtgt
ggctgcacacctggactccagctcattgaccacaagacctgtggagacatcaatgagtgc
atgaatcctggcatttgcagccagatatgcatcaacctgaagggagggtacaagtgtgag
tgccacaacggctaccagatggatccaactaccggcgtctgcaaggctgtgggtaaagag
ccctgcctgatcttcacaaaccgccgtgatattcgtcgtctgggtctggagaggaaagag
tacactcagattgtgaagcagcagaggaacgccgtggctttagatgcagactttaaccag
cagaccatcttctgggccgatcttggtcaaaaggccatattcagcactgtcctagataaa
cgtggagatgttgagacgcacaagacggtgatagaaaacatccaaactcctgtgggaatt
gcagtagactggatttacaggaacttttactggaccgacctggggaccaaaaccatttct
gtcagcaattttaatggaaccaaacagaaagttctgttcaaccaaggcctgattgaaccc
gcttccattgctgtggatccactgtctgggttcctgtactggtctgactggggggagcca
gccaagattgagaagtccggcatgaacggagtcgacagacaggttctggtggagactgac
atccaatggcccaatggaatcactctggatctgatcaaaggcaggttgtactgggtggac
tccaagctgcacatgctctgcagtgttgacctgaatggagacaacaggaagaaggtgctc
cagtctgcagagtacctggctcatccctttgctctcacagtttttgaggaccgagttttc
tggactgatggagaaaacgaggcaatctatggtgcaaacaagttctcaggatctgatgtg
gtgacactagccagcaatctgaatgaccctcaggacatcatcgtgtaccacgagctgatt
cagttatctggtaccaactggtgcacagaaaggggggtaaatggaggctgcggcttcatg
tgtctacctgcaccacaggtcaacaaacactctcccaaatacacctgtgtgtgtccggag
ggacaggagctggcggctgatggcttccgctgcagaccagaggctaacgtgagcacgtcc
atccaggtggattccactgccagagggtctgctggcgcctgggccatcctgcccgtcttg
ctgctggccatggctggagctggaggttacctgatgtggaggaactggcagctcaggaac
cagaagagcatgaactttgacaacccggtctacctgaagaccacagaagaagacctcaac
attgatataacccggcatggcgctaacgtgggccacacttaccctgcgatttccatcgtc
agcacagaagacgactcgtcctga
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