Oryzias melastigma (Indian medaka): 112140001
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Entry
112140001 CDS
T07439
Name
(RefSeq) DDB1- and CUL4-associated factor 1 isoform X1
KO
K11789
DDB1- and CUL4-associated factor 1 [EC:
2.7.11.1
]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
oml01001
]
112140001
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oml04121
]
112140001
Enzymes [BR:
oml01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
112140001
Protein kinases [BR:
oml01001
]
Serine/threonine kinases: Other
Other
112140001
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
112140001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR5
LisH
EIF3I
Beta-prop_WDR3_1st
Beta-prop_EML_2
Beta-prop_WDR3_2nd
LisH_PAC1
WD40_WDHD1_1st
Motif
Other DBs
NCBI-GeneID:
112140001
NCBI-ProteinID:
XP_024118657
Ensembl:
ENSOMEG00000008489
LinkDB
All DBs
Position
LG2:complement(2325928..2347907)
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AA seq
1533 aa
AA seq
DB search
MSSSDDDPSSSAAAAPSPAVPAAMAVTASVDVKAELASLLDEWEEARRGTAEQLVTILTK
ISEVIERETGEYHKADPDPFDDRHPVVSTCELSDVIWSSGRADPNCMLGQLLKMLFMNDD
FTNQLLDSYIMTSREASLNTAACRLLQNIMPSLETTAVFEEKEGLVEKLFSWAQEAPPPL
CVYATGLLARAMSNQEVVAHHREENAQLVHMKIQRLVRLQTSSSSQDLPQAPQEEAAQMS
QNQKAGDDAAQEEEADRGASRGSSQARPSSPLGCHPNDCESSSSSTQTAPHPHSGGLESA
SKEVEDAHGGGGRRPTLQENGRKAKQKSNCSAGREQEEEGPDSGALPTNTASWSEMSSML
IGSDYRLLPLSPAMEQRLILQYLTSLGDYQELLAVFMKLDTRSLLMNYIDLRRTNNVQLT
FDALLFLASLLLHKKFAAEFIAHGGVQKLLEIPRPSMAATGVSLCLYYLAYNQDAMERVC
LLPGGVLSDVVSYALWLLESSHTSGVCHATMFFSISFSFRAVLQLFDQQDGLRRLVNLIS
TLEILNIENEISIMSDDQVFTSRQTAKHTCMALRRYFEAQLGLKTESFKQSLCSSDGALQ
LLHKAFTYTREQVTEMMEFLIESGPPHLHWEPVEVFCKLSCVPLMLQLISTACDWGTYYG
RSDTVRYALDILAILTVVPKVQLLLADTVEVLDENRSPVSTVGMSIILGVAEGEVFPNDA
EIQKSALQVIINCVCAPDQSLSAGAAFTPLRPPSPTNRVLTHIWQVVQNNNGIKVLLSLL
AVKMPITDADQIRALACKALVGLSRSSAVRQIISKLPLFTSSHIQQLMKEPVLQDKQSDH
VRFCRYAAELMERVSGKPLLMGSDVSLARLQRASVVAQSRISFSERELLVLIRNHLVAKG
LHDTASTLTKEANLPVTSLCPNSSSFCATPPSSAPAVPRGGWLAGGIASRVASHVGTSPV
SSTSAASRLHGLPHSSSSSGTFAHPTSQSLLPVGRILFSRERAATCTPGRKVCALKQKSD
HGAFIQSPAIKKQLERHLPSPPSLDSIIIEYLRKQHARCPNPVTTCPPFSLFTPHRCPEP
KQRWQASGNFTARLGGRVLHPRHRGVDWGGLDRHLIFSRFRPATVFTERDQYESGFTCCA
FSALERFLLLGNCSGHLVFYNVISGEQEAKYTCHATPITHLQPSGDGKLVLTSASWGTPL
SALWSSEGVFERKLSFSEDHYMEFSKLSQDRVIGTKDQVAHIYDIHTGQKTLTLNYPALA
NSYKRNCATFNPTDDLVLNDGVLWDVRASRAIHKFDKFNMNISGVFHPNSLEVLINTEIW
DLRTFHLLHTVPALDQCRVVFNSNGTIIYGAMLHPDDDEDAMDPQMKSPFGSSFRTFDAT
NYKPIATVDVKKNIFDLCTDSKDRFLAVIEDQDAQSLDTLCRLYEVGRQKLAEEGDDDQE
DEDQEEDSSDSDDDDDDDDEDTDALLEELINDDPENLDLADSPADEEVRGLLSSDSDDED
EGSDHSSRSSDGSDSLHSGILEAFFMEGSDDED
NT seq
4602 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcctcagatgatgacccgtcctcctctgctgcagccgctccgtcccccgccgtg
ccagctgccatggcggtcacggcgtccgtggatgtcaaggctgaactggcgtccctgctg
gacgagtgggaagaagcccggcgaggaacggcagagcagctcgtgaccatcctgaccaag
atctcggaggttattgaacgtgagacaggagaataccacaaagccgacccggacccgttt
gacgaccgccatccagtggtttcaacttgtgagctgtcagacgtcatctggagctcaggg
cgggcggaccccaattgcatgctgggacagctgctgaagatgctcttcatgaacgatgac
ttcactaaccagctcctggactcctacatcatgaccagcagggaggcgagcctcaacacg
gcggcctgccgcctcctccagaacatcatgcccagcctggaaaccacggcggtctttgaa
gaaaaggaaggtctggtggaaaagctcttcagctgggcgcaggaggctccgccccccctg
tgtgtctacgccacgggcctgctggctagagccatgagcaaccaggaggtggtggcccac
cacagagaggagaacgcacagctggtccacatgaagatccagcgcctcgtcaggctgcaa
acctccagctcctctcaggatctacctcaagctcctcaggaggaagctgctcagatgtca
cagaaccagaaggccggggatgatgcagcacaggaggaggaagcagaccggggggccagc
agggggtcgtcgcaggccagaccttcatccccgctcggttgtcacccgaatgattgtgaa
agcagcagcagctccacccagaccgctccacatcctcacagtggaggtctggagtccgcc
tccaaggaggtggaggacgctcatggaggaggaggaaggagacccacgctacaggagaac
gggaggaaggccaagcagaagagcaactgtagtgctggtagggagcaggaggaagagggg
cctgactctggtgcactgcctaccaacactgcatcctggtcagagatgagctcaatgctg
attggctccgactaccgcctgttgcctctgagcccggccatggagcagaggctcatcctg
cagtatctgacctcgctgggagattaccaggagctgcttgcagtcttcatgaaactggac
acgcgctcgttgctgatgaactacatcgacctcagacggaccaacaacgtgcagctcact
tttgacgcgctcctgtttttggcttcactgctgctgcataagaagtttgctgctgagttc
atcgctcatggaggagtgcagaaacttctggagatcccgagaccttccatggcagcaacg
ggagtttctctctgcctgtactacttggcatacaatcaggacgccatggagcgggtgtgc
ctgcttccgggcggcgtgctctcagacgttgtctcctacgctctgtggttgttggagtca
tctcacacttcaggcgtctgccacgccaccatgttcttctccatttcattttcgttccga
gccgttctgcagctctttgaccagcaggatggtctccgccggctggtcaatctgatcagt
actctggagatcctcaacatagagaacgagatctccatcatgagcgatgaccaggtgttc
accagtcgacagacagcgaagcacacctgcatggctctgcgcaggtactttgaagctcag
ctgggcctgaagacagagagcttcaaacagtctctgtgttcctcagatggtgccctccag
ctactccataaggccttcacctacaccagggagcaggttacggagatgatggagtttctc
atcgagagtggacccccccatctccactgggagccggtggaggtcttctgtaagctgtcc
tgcgtccctctgatgctgcagctcatatccacagcctgtgactggggaacctactacggc
aggagcgacaccgtccgctacgccttggatatcttggccatcttgacagtggttcctaaa
gtgcagttgctactggcggacactgtagaggttctggatgagaaccggtctcccgtctcc
actgtgggaatgagcatcatcctgggggttgctgagggggaggtgtttcccaatgacgct
gagattcagaagtcagcgctgcaggtgataatcaactgtgtgtgcgctccagatcagagc
ttgagcgccggggcggctttcacccccctgcgacccccttcccccaccaacagagtgctg
acccatatatggcaggttgtgcagaacaacaacggaataaaggtgctcctgtccctgctg
gcggtaaagatgcccatcacagacgcagaccagatccgcgctctagcctgcaaggctctg
gtgggactgtcccgcagctctgcggtccggcagatcatcagcaagttaccgctcttcacc
agcagccacatccagcagttgatgaaggagccggtgctgcaggacaaacaaagcgaccac
gtgcgcttttgccgctacgccgctgagctgatggagcgggtgtctgggaaacccctcctc
atgggctcggacgtgtctctggcccgtctgcagagggccagcgtggtggcccagtccaga
atcagcttctcagagcgggagctgctggtgctgatcaggaaccacctcgtggccaaaggc
ctgcacgacactgccagcacgctcaccaaggaggccaatctacctgttacctctctctgt
ccaaactcctcctccttctgtgccacgcctccctcctccgcccccgccgtgccccggggc
ggctggctggctggtgggatcgcgtcccgcgtcgccagtcacgtaggaacgtctcctgtt
tcttcgacctccgcagcctctcgactccacggccttcctcactcttcatcctcctctgga
actttcgctcatcccacgtcgcagagcttgctgcccgtcggacggattctgttctcgcgg
gagcgtgcggccacctgcaccccagggagaaaagtctgcgccctcaagcagaagtctgac
cacggggctttcatacagagtccagccataaagaagcagctggagcgccaccttccctcc
cccccctccctggacagcatcatcatagagtatctgaggaagcaacatgctcgctgcccc
aaccccgtcaccacctgcccccccttctccctcttcaccccccaccgctgccccgagccg
aagcagaggtggcaggcgtccggcaacttcaccgcccgcctggggggcagggtgctgcac
cccagacacagaggggtggactgggggggtctcgacagacatctgattttcagcaggttc
cgacccgcgaccgtcttcaccgagcgggaccagtacgagtccggcttcacctgctgcgcc
ttctccgctttagagcgcttcctgctgctgggcaactgctcgggtcacctggtcttctac
aacgtcatctctggagagcaagaggccaaatacacctgccacgccacgcccatcacacac
ctgcagccctccggggatggaaagttggtgctcacttcagcctcctgggggactcctctg
tcggcgctgtggagctcagaaggcgtctttgagaggaaactctccttctctgaagatcat
tacatggagttcagtaaactctctcaggatagagtcattggaaccaaagaccaggtcgca
catatctacgacattcacacgggccagaagaccctgactctgaactaccccgctctggcc
aacagctacaagaggaactgtgccaccttcaaccccaccgatgacctggttctaaatgac
ggcgtcctgtgggacgtgcgggcttctcgggccatccataagtttgataagttcaacatg
aacatcagcggggtcttccaccccaacagcttggaggttctcatcaacactgagatctgg
gacctcaggaccttccacctgctgcacactgtcccggccctggaccagtgcagagtggtc
ttcaacagcaacggcaccattatttatggagcaatgctgcatcctgatgatgatgaagac
gccatggacccgcagatgaagagtccctttggttcttccttcagaacgtttgatgccaca
aactacaaacctatagccacagtggatgtaaagaaaaacatttttgatctttgcaccgac
agtaaagaccgcttccttgctgtgatagaggaccaggatgctcagagcttggacacgttg
tgccgtctgtacgaggtgggacggcagaagctggctgaggaaggagacgatgatcaggag
gatgaagatcaggaggaggattcctcagactcagatgacgacgacgacgatgatgatgag
gatacagacgcactcctggaggagctgatcaatgatgacccagaaaatctggacctagca
gactcgcctgcagatgaagaggtcagaggtcttctcagcagtgacagcgatgatgaagac
gagggctcggatcattcaagcagatccagtgacgggtcagattccctccactctggcatt
ttggaggcttttttcatggaggggtcagacgatgaagactag
DBGET
integrated database retrieval system
