Oryzias melastigma (Indian medaka): 112140023
Help
Entry
112140023 CDS
T07439
Name
(RefSeq) transcriptional regulator ATRX
KO
K10779
transcriptional regulator ATRX
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
112140023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112140023
03036 Chromosome and associated proteins [BR:
oml03036
]
112140023
Transcription factors [BR:
oml03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
112140023
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
112140023
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
HDA2-3
Motif
Other DBs
NCBI-GeneID:
112140023
NCBI-ProteinID:
XP_024118694
Ensembl:
ENSOMEG00000004958
UniProt:
A0A3B3BEJ3
LinkDB
All DBs
Position
LG14:11603168..11625065
Genome browser
AA seq
1876 aa
AA seq
DB search
MSAFSSSSKLNLLVNKLHEYLAHSSVEDGTGVQSPDVSGQTHAGFSAGNSTGHGAETSLD
NRYSRRKPSVVIKHSGLDESGDSNESDAVNSTENTNGRLDVTQLPKGTAFVRPEPVDNGR
DEFRGPEFRSRKPNVLRKEFSRKRGGGEHVGIVTCTACGRQVNHFQRDSLYRHPVLKVLI
CKACYKYYSSDEISKDGDGMDEQCRWCAEGGNLICCDFCSNAFCKKCILRNLGRKELSGI
LESKWYCYVCSPEPLFDLVAACNHVLENMEGVWSQQRRRNRVEPDKSGLLPQNICLDKWD
HSGMDGSVVFNYNALQVSKEVTKKAKHLVESTNALNQMFVNFIHSVTKKQQTPSVRVLYF
NSFLAVVKGLKKSLAALEGSLKEEFSDLDLSISWERVFSSDFDALEAESDMELNTSDERC
LSDLQKMAAEHFEDKDSDRNGFMDGRIIHDHFDQETHEARVSAGVMGLNPNQESPVDITK
KLVVKLTPVAMEQPPSPEAPKGEEEEFEMEKNVAEEEKASDEDGKVEANSSEPHLLEEEK
GNRRSPRVKTTPLRRPSDVKAKTSFSAGDSDSDSDPGEIPDATPATNIKEQSLSRAEDDS
DSDEVPAALLERVAMIQSSDEPQSEEDGNQASPNKVAKKCLFWLTKNSPMSPEKMRRKRK
KPDQSSESESSTMVAKAQQDSQMDSSSDDDSQNQIQHLSAVRSIGTSHLGKEKKGMARKQ
RRLQVEESKRKSYREATDSSSSSSSSSSSSSSSEDDDSGSDVSDQKMKPITEGVMPLDVA
AFQQSSGDDEQSGPSWAAGDDDDDDLENRIAKKMLLARIKANYSSSDISSDEEVQEKESQ
SLFDQEVREDIEDGGTRESGEDLASETSDSMPEKPKSRHHLLQLKLTLDEGTSGSNEVEQ
QSKRRAEKNPASEAESDANGNGCHDDEGMSEELSLSEDGEDEPHRIKVEEIEGVCSLKDM
QASCIWLSDSSTEKSDLEEENKEESKPKGTPKGRKEIRKIIEDEELRSETQEALREEEER
RRRLADREQQMEDMREITVIEDELSQVVCPVATKLVLDQDEETKQPLVQVHSNLVTRLKL
HQVDGVQFIWDSCCESVKKANSTPGSGCILAHCMGLGKTLQVVTFLHTVLLSPNLNFRTA
LVVCPLNTVLNWATEFNKWQENLGKDKVKVTVLSAINQPSERIRALQRWHRDGGVAIMGY
KMYTVLSLGPKAATEELKKELKSLLVNPGPDFVICDEGHVLRNQTTITLKAMTAIKTQRR
VVLTGTPLQNNLVEYHCMVSFIKKNLLGSLSEFRNRFINPIENGQCADSTPKDVRIMKKR
AHVLHSVLAGCVQRKDYSELTQFLPPKYEYVLAVRVSPLQCKIYRHYLDLITRENSRPFN
AKKKAGANLFKDFQVLGRIWAHPWCLHLIQMSKESKRTSRKKSQAPQSDVENIAAESSMI
EDKGDESILNEENQEVADPEAREAANSSKEGWYKSLLSEEDAKVMEHSGKMVILFEILRI
AENLDDKVLVFSQSLVSLTLIEEFLAASHRSRDPSSKAGSWIKNVDYYRLDGTMNSTLRK
KWADEFNYSANARGRLFLISTKAGSLGINLVAANRVVIFDASWNPSYDIQSIYRVYRLGQ
VKPVFVYRLLAQGTMEEKIYDRQVTKQSLAHRVVDQQQIERHFTLNELSELYTFEPDLLD
DPNSKKSRRPVSLFPTDLVMSQLLESCRDQIVSYHEHESLLDHKQEEELTEAERKDAWAE
YEAEKEPIALPLTEKQNTLQTKTNEQLEELFNKYKTNVVNLFATMHKIRFFTLEDYVLRL
RQQYPLMPEAELRTKAEIWKQYDEKRSNLERASCWDTITKQKLVISHIQAILNFRRSQGT
YTKVAPVTEVRPSGPI
NT seq
5631 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgttcagctcttccagcaaactgaatttactggtcaacaagcttcatgaatac
ttggcacattccagcgttgaagacggcactggagttcaatcaccagatgtatctggtcag
acacatgcaggcttttcagcaggaaactctactggtcacggcgcagagaccagcctagac
aacagatactcaaggagaaaaccctcagttgtcataaaacactctggactggatgagtct
ggagactcaaatgaaagcgatgcagtgaattcgaccgagaacacaaatggccgtcttgat
gtgactcaattgcctaaaggtacagcttttgtcagacccgaacctgtggacaatggaaga
gacgagttcaggggtccagaatttcgaagccgaaaacccaacgtgctacggaaagagttt
tcaaggaaacgtggaggaggtgaacatgttggaattgtgacttgtactgcttgtggtcgt
caagttaaccacttccagagagactccttgtatcgacatccagttctgaaagtacttatt
tgcaaggcttgctacaaatattactcaagtgatgaaatcagcaaggatggagatggaatg
gatgagcagtgcaggtggtgtgctgaaggcggcaacttaatctgttgtgacttttgcagt
aatgctttttgcaagaaatgtattctacggaatctgggacgaaaggaactgtctggcata
ttagagagcaaatggtactgctacgtctgcagcccagaacctctttttgacctggtggca
gcctgcaaccatgtccttgagaacatggagggcgtgtggagtcagcagcgaaggagaaat
cgagtggagccagacaaatctgggctcttgccacagaacatttgtctggataaatgggac
cacagtggaatggatgggagcgttgtctttaactacaacgctttgcaagtgtctaaagaa
gttaccaagaaggccaagcatttagtggagtcaacaaatgccttaaatcaaatgtttgtc
aatttcattcacagtgtgacaaaaaaacagcaaactcccagtgttcgcgtgctgtatttt
aactcgtttttagctgttgttaaaggcctaaaaaaatctctggcggcactggagggtagt
cttaaggaagaattcagtgacttggatctatctatcagctgggagagggtcttcagcagt
gattttgatgctttagaggccgaatccgacatggagctgaacacttctgatgaaaggtgc
ttgagcgacttgcagaaaatggcagctgaacattttgaagataaagattctgaccgcaac
gggttcatggacggaagaatcatacacgaccacttcgatcaagaaactcatgaagcaaga
gtgagcgcaggagtcatgggcctcaatcccaaccaggaaagtcctgttgacatcactaaa
aagctggtcgtcaaacttacgcctgttgcaatggagcagccgccatcacctgaagctcca
aagggagaggaggaggaatttgaaatggagaagaatgtagcagaagaagaaaaagcgtct
gatgaagatggtaaagttgaagcgaactctagtgaacctcacttattagaggaagaaaaa
ggtaacaggcgttcccctcgtgtcaagacgactcctctacgccgaccgagtgatgtcaaa
gccaaaacctctttttcagcaggagacagcgacagtgattcagaccctggcgagatccca
gacgccacaccagccacaaacatcaaggagcaaagtttgagcagagcagaggacgactcg
gactcagacgaagttcctgccgctctactcgagcgagtagccatgatccaaagctcggac
gaaccccagagtgaggaagatggaaatcaggcgtctccaaacaaggtggcaaagaaatgt
ttgttttggctcactaagaacagcccaatgtcaccagagaagatgcggcgaaagcgcaaa
aagcctgaccagtcatctgagtctgaatcgagcaccatggttgccaaagcccaacaagac
agccagatggactcctctagcgatgacgactcgcagaaccaaatacaacacttaagtgca
gtgaggtcaataggaacttcacacctcggcaaagaaaagaaaggaatggctagaaagcag
agaagactgcaagttgaagagagtaaaagaaaatcttaccgggaagctactgattcttca
tcctcctcctcctcctcctcctcatcctcctcgtcaagtgaagacgatgattcgggcagt
gatgtcagtgatcagaagatgaagccaatcacagaaggtgtgatgccccttgatgtagca
gcattccagcagtcatcaggagatgacgaacagtccgggccctcatgggcagcaggagat
gacgacgacgacgatctagaaaatagaatcgctaagaaaatgctgttggccagaattaaa
gccaactactcttcgagtgatatttcttcagacgaggaggtgcaggagaaggagtctcag
tcactgtttgaccaggaggtcagagaagacattgaggatggtgggactcgggaaagtggt
gaggatttggcctcagaaacctctgacagcatgccagaaaagcccaaatccagacaccac
ctcctccaactcaaactcactttagacgagggaacatcaggaagcaatgaagtagaacaa
cagagcaaaagaagggcagagaagaatccagcctctgaagctgaaagtgatgctaacggc
aacggttgtcatgacgatgagggcatgagtgaggagcttagcctatcagaggatggtgaa
gacgaacctcatagaataaaagtcgaagaaattgaaggagtttgtagtctaaaagacatg
caagcgagctgcatttggttgtctgactccagcacggaaaagagtgatctagaagaggaa
aataaagaggagagtaaacctaaaggtactcccaaaggacgtaaggagatccgcaaaatc
attgaggatgaggagcttcgatctgagacgcaggaagctctccgggaggaggaggagaga
cgcaggcgtttggcagacagagaacaacaaatggaagacatgagagagattactgtgata
gaagatgagctgtctcaggtggtttgccctgttgcaaccaaactggtgttggatcaggat
gaggagaccaagcagcctcttgttcaagttcacagcaatctggttacaagactgaagctt
catcaagtggacggtgttcagtttatttgggacagctgttgtgagtctgtaaagaaggct
aactccactcctggatcaggctgcatcctggctcactgcatgggtttagggaagactttg
caggtggtaaccttccttcacacggtgctactttctccaaacctgaacttccgaacagcc
ttggtggtgtgtccgctcaacactgtcctcaactgggccactgagttcaataaatggcag
gagaacttgggaaaggataaagtcaaagtgacagtattgtctgccataaatcaaccgagt
gagcgtatcagagctctgcagcggtggcacagagacggaggtgttgcaatcatgggatat
aagatgtacaccgtcctgtctctcggccccaaagccgccactgaagaattgaagaaggag
ctgaagtctttattagtgaatccaggtccagactttgtgatttgtgatgaggggcacgtc
cttcgcaatcaaaccaccataaccttgaaagcaatgactgctatcaaaacccaaagaagg
gtggtgctgactggcacgccgcttcaaaacaaccttgttgaataccactgcatggtcagc
ttcatcaagaagaatcttcttggttctctgagtgagttcaggaacagattcatcaacccc
atagagaacgggcagtgcgctgactccaccccaaaagacgtcaggatcatgaagaagcgc
gcccacgtgctccactctgtgttagctggatgtgtgcagaggaaagattactcggagctg
acgcagtttctgcctcccaaatatgagtacgtgctggcggtgagagtttcgcctcttcag
tgtaagatttatcgccactacctcgaccttattacccgtgagaactctaggccttttaat
gcaaagaaaaaagctggagcaaacctgtttaaagacttccaggttctcggccgaatttgg
gctcatccatggtgccttcatctcatccagatgagtaaagaaagcaagagaacgtctaga
aagaagagtcaagcaccacaaagtgatgtggagaacatcgcggcagaaagttcaatgatt
gaggacaaaggagacgaaagtatcttaaatgaggagaaccaagaggttgcagatcctgaa
gccagggaagcagccaacagctcaaaggaaggctggtacaagagcctgctgtctgaagag
gacgccaaagtcatggagcattctgggaagatggtgatcttgtttgagatcctcagaatt
gctgagaacttggatgataaagtgctcgttttcagccagtctttagtctcgctgacccta
attgaagagttccttgcagcttctcatcgttccagagacccgtcctccaaagcgggcagc
tggattaaaaacgttgactactatcgccttgatgggaccatgaattctaccttaaggaag
aaatgggcagatgagtttaactactctgccaatgccaggggacgcctgtttctcatttca
acaaaggccggatcgctgggcatcaacctcgtggcggctaacagagtcgtcatctttgat
gcttcctggaatccttcctacgacatccagagcatttacagagtgtaccgcctgggccag
gtcaaaccagtgtttgtgtaccgcctcttggctcagggtaccatggaggagaagatttac
gatcgtcaggtgactaagcagtctctggcccacagagttgtagaccagcagcagattgag
agacatttcactcttaatgaactgtctgaactctacacatttgagcccgacctgctcgac
gaccccaactccaagaaaagcaggagacccgtctccttatttcccacggatctagtgatg
tctcagctgttagaaagttgcagggatcagattgtgtcgtatcacgagcacgaatccctg
ctggaccacaagcaggaggaggagctcaccgaggcggagcgcaaagatgcctgggctgag
tatgaagccgagaaagagccgatcgccctaccgctcactgagaaacagaacactctgcaa
acaaagacgaatgagcagctggaggagctgttcaataaatacaaaacaaatgttgttaac
ttgtttgcaactatgcacaagattcgattcttcactctagaggactacgtgttgcgtctg
cggcagcagtatcccctcatgccagaggcagagttgaggactaaagcggagatctggaaa
cagtacgatgagaagaggagcaacctggagcgggcctcgtgttgggatacaatcacaaag
caaaaactggtcataagtcatattcaagccattctgaactttcgaagaagtcaaggaacc
tacacgaaggtggcgccggtgactgaagtgagaccgagtggaccaatatga
DBGET
integrated database retrieval system