Oryzias melastigma (Indian medaka): 112140337
Help
Entry
112140337 CDS
T07439
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml02010
ABC transporters
oml04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
112140337
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
112140337
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
oml02000
]
112140337
Transporters [BR:
oml02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
112140337
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
112140337
NCBI-ProteinID:
XP_024119023
Ensembl:
ENSOMEG00000011599
LinkDB
All DBs
Position
LG14:complement(1227934..1260694)
Genome browser
AA seq
2299 aa
AA seq
DB search
MAVSTQLGLLLWKNFTYRRRQTIQLLIEIIWPLFIFFILISVRIHYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRHPTPGESPGVVGNFNDSIISRLLTDAKKILLYSQNDK
SYEGYKGLLRALRKLQKNTARFKLKDFLQDNETLSHFLHHNASLPHHALKHIVEADVNLE
KVLTKGFGFHLRDLCNTTPLEEFVLIADPNVSRLTQEIICNSSSDWLNKAQHHFLSNLDF
LKPIRRDVKADPKVVQEVSAATDNLLESLGALAVEFSSMKSWKDMRKEILYLTANPTGSP
NQMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGNHGNDSDNEPISSYDNSSTPYC
NNMMKSLESSPISRMIWRALKPLLMGKILYTPDTPATQRIIHEVNKTFQELGVLRDLGGM
WEEMKPKLWNFMESSEEMDMVRNLLQSNVGAAFLNAQLSETEWSVSDVANFLSKASEDKR
PAGTAYSWRDIFNESDHAIQTISRFMECVNLDKLEPVANEERLVNKSMSLLDNQKFWAGI
VFPDISHSDNSDLPPNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYVWGGFSY
LQDVIEQGIIRAVTGSKEKTGIYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAII
IKGVVYEKEARLKETMRIMGLNNGTLWLSWFISSLIPLLISAGLLVMLLKMGNLLPYSDS
GVVFLFLGSFGVVTIMQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFGA
KVVVSLLSPVAFGFGCEYFALFEEQGVGIQWSNLLASPLEEDSYNLTTSICLMLFDAVLY
GIMTWYIESVFPGQYGIPRPWYFPFTKSYWCGEKENKDMSASMSKKGNAEAVCIEEEPGH
IDPGVYIENLVKVYSHGNKLAVDGLSLKFYEGQITSFLGHNGAGKTTTMSILTGLFPPTS
GTAYILGKDIRSELSTIRQNLGVCPQHNVLFSMLTVEEHIWFYARLKGLPEEKVKAEMEQ
IVNDVGLPHKRNSRTSTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLL
LKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKRDY
DLTLQSCRNSASTVSYSKKTEKEDSISESSSDAGLGSEPDSETTTIGKTWIKKSFNPFSD
RHSLKYLTSSFFSTDVSLISNVIFKHVREARLVEDLGHELTYVLPYQSAKDGAFVELFHE
LDDRLTDLGISSYGISDTTLEEIFLKVAEDSGVDSVELSDGVVPTRTRRRHAFGDHQSCL
KPFTEDDFDFNDSEGDPESRETDWLGGADGKGSYQVKGWSLKRQQFVALLWKRFLYARRS
RKGFFAQIVLPAVFVCIALVFSLIVPPFGKYPSLALHPSMYGEQFSFVSNDMPEDPHTNK
LLGALMEKPGFGSRCMKGEPIPNTPCTAVEDEWSVPDISESVRDIFDKGNWTKENPSPLC
QCSCEGRKRMLPECPDGAGGLPPPQMKISDKDTLQNLTGRNVSDYLVKTYAQIIGKSLKN
KIWVNEFRYGGFSLGARSSQFLSHKEEIDDAIVQLRRRFHLERGTASDRFFRSLSSFIQG
LDSKNNVKIWFNNKGWHSISSFLNVMNNGILRASLPAGKDPSKFGITAYNHPLNLTKEQL
SQVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQERVNKAKHMQFISGVQPFLYWLANF
VWDMCNYIVPATLVIIIFVCFQQDAYVSSTNLPVLALLLLLYGWSITPLMYPASFFFKIP
STAYVVLTSVNILIGINGSVSTFVLELFGSNEIGGINDILKNVFLIFPHFCLGRGLIDMV
KNQAMADALERFGENRFRSPLAWDMVGKNLFAMAIEGVVFFCITVLIQYRFCIKTRSSIS
HLKPIGEEDEDVARERQRILSGAGQSDILELRELTKIYKRKQKPAVDRLCVGIPPGECFG
LLGVNGAGKTSTFKMLTGDSLVTSGEAYLAGKSVNTEIDEVHQNMGYCPQFDAINDLLTG
REHLEFYAILRGVPEKEVCEVAEWGIRKLGLVKYVDKSAGSYSGGNMRKLSTAIALIGGP
PVVFLDEPTTGMDPKARRALWNAILSIIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFR
CLGSVQHLKNRFGDGYTIILRVAGPDPDLRPVMNFIEQELPGSTLKEKHRNMLQYQLPSS
LTSLARIFSLLSKNKETLCIEDYSVSQTTLDQVFVNFAKDQSDEDHLKDVHLSKRDAVVV
DVSQLNSFLIDSKSRESCV
NT seq
6900 nt
NT seq
+upstream
nt +downstream
nt
atggcagtctccactcagttgggtttgctgctgtggaagaacttcacctaccgacggaga
caaactatccagctgctcattgagatcatctggcctctattcattttctttattttgata
tcagtccggatacattacccaccctacgaacaacatgaatgccacttccccaacaaagcc
atgccctctgcaggcaccctgccatgggtacagggcatcatctgtaacgccaacaacccc
tgcttccgtcatcccactccgggagagagtccaggagttgtggggaattttaatgactca
ataatctctcgtttgttgactgatgccaagaagatcctgctctactctcagaacgataag
agctacgaaggctacaaaggactgctgagggccctcaggaaacttcagaagaacacagct
cgtttcaagctgaaggacttcttacaagacaatgaaactctttcccattttctgcaccac
aatgcatctctccctcaccatgcgctgaagcacatcgtggaggctgatgtcaatcttgaa
aaggtgctcaccaaaggttttgggtttcatcttcgtgacctctgcaacaccacccctctg
gaggagtttgtcctgattgccgaccccaacgtttcccgtttaactcaagaaataatctgc
aactcgtcaagtgactggctaaacaaagctcagcaccacttcctctccaacttggatttc
ctcaaaccgatccggagggacgtgaaggcagaccccaaagttgttcaggaagtctcagct
gcgactgataacctcctggagagcctgggagcgctggccgtggagttttccagcatgaag
agttggaaggacatgaggaaggagatcctctatctgactgcaaaccccacagggtctcca
aaccaaatgtaccaggctgtgtcccggatcgtgtgtggacacccagaggggggaggcctc
aaaatcaagtctctcaactggtacgaagacaacaactacaaggcgctgtttggaaaccac
ggcaacgacagcgacaatgagccgatctccagttacgataactcttccacaccgtactgt
aacaacatgatgaagagcctggagtccagccccatttccagaatgatctggcgagcgctg
aaacctctgctcatggggaagattctgtacaccccagatactccagcaacccagaggatc
atccatgaggttaataagaccttccaggagctgggcgtgttgagggacctgggaggaatg
tgggaagaaatgaagcccaaactctggaacttcatggagagcagtgaggaaatggacatg
gtcaggaacttgctgcagagtaatgtcggcgccgcgttcctgaacgcacagctcagtgag
actgagtggagcgtgtcagacgtggcgaacttcctgtcaaaagcctcagaggacaaaaga
cctgcagggaccgcatactcctggagagatatcttcaatgagagcgatcacgccatccag
accatttcccgcttcatggagtgtgtgaacctggataaactggagccggtggccaatgag
gagcgcttggtcaacaaatccatgagtctcctggataaccagaagttctgggctggaatt
gtgtttcccgacatatcgcacagcgacaacagcgacctgccgcccaacgtcaactacaag
atccgcatggacatcgataacgtggagagaaccaacaagattaaagacggatactgggac
cccggtcccagagcagacccatttgaggacctccggtacgtctggggagggttctcgtac
ctgcaggacgtcatagagcagggaatcatcagagcggtcaccggctcaaaggagaagaca
ggcatctacattcagcagatgccttacccctgctacgttgatgacattttcttgcgagtg
atgagtcgctccatgccgctcttcatgactctggcctggatgtactcggtggccatcata
attaaaggcgtggtgtacgagaaggaggcccgcctgaaggagaccatgaggatcatgggg
ctgaacaacggcaccctgtggctgagctggttcatcagcagcttgatcccgctgctgatc
agcgcagggctgctggtgatgttgctgaagatgggaaacctgcttccttacagcgattct
ggcgtcgtcttcctcttcctgggatccttcggcgttgtaaccatcatgcagtgttttctc
atcagcacgctgttttctcgtgccaacctggccgcggcgtgcggtggcatcatatacttc
actctctacttgccttacgttctgtgtgttgcctggcaagactatgtgggatttggagca
aaagttgtagtgagtctgctgtctcctgtggcttttggctttggctgcgagtactttgcc
ttgtttgaggagcaaggagtgggaatccagtggtccaacttgctggcaagccccttagag
gaggacagctacaacctaaccacatccatctgcctcatgctgtttgatgccgtgctgtac
ggaatcatgacctggtacattgaatcggttttccctggtcagtatggaatccccagacct
tggtatttccctttcaccaaatcatattggtgtggagaaaaagaaaataaagacatgtct
gcatcgatgtcaaagaagggaaacgcagaggctgtgtgcattgaggaggaacctggccac
attgatcccggagtttacatcgaaaaccttgtgaaggtctacagtcacggaaacaagctg
gctgttgatggactgagcctgaagttctatgaaggacagatcacctccttcttgggtcac
aatggagccggcaagaccaccaccatgtccattctaactgggttgttcccgcccacctct
ggcaccgcctacatcctggggaaggacatccgctccgaactcagcactatccgacagaat
ctgggcgtctgcccacagcacaacgtgcttttcagcatgttgacagtagaggaacacatc
tggttctacgcgcgcctgaaagggcttccagaggagaaggtgaaggctgaaatggaacaa
attgtgaatgatgtcggccttcctcacaaacgaaactctcgcacaagcaccctgtcaggt
gggatgcagaggaagctgtcagtggctctggcttttgtcgggggctccaaagttgtgatt
cttgatgagcccacagctggtgttgacccctacgctcgaaggggaatctgggacctgttg
ctaaaatacagacaaggccgtaccatcattctgtccactcatcacatggatgaagctgac
atcctgggtgacagaattgctatcatttcccatggcaagctctgctgtgtgggctcctcc
ctcttcctgaagactcaactcggtacaggctactacctgacgctggtgaaaagagactac
gacttgactctgcagtcctgcaggaactctgccagcacagtttcctacagcaagaaaaca
gagaaggaggacagcatatctgagagcagttcagatgctggactgggcagtgaacctgac
agtgaaaccaccactattggtaagacatggattaaaaaatcctttaaccccttttctgat
agacattcactcaaataccttacgtcttcattcttttccacagatgtttccctcatttcc
aacgtgattttcaagcatgtccgggaggctcgcctggttgaggatcttggacatgaactc
acttatgtcttgccctaccaatcagctaaagatggagccttcgtggagctcttccacgag
cttgatgaccggcttactgatctgggaatatcaagttatggaatttccgataccactctg
gaagagattttcctgaaggtagcagaagacagtggagtcgattctgttgagctttcagac
ggagtcgtaccaactcggactcgtcgacgccatgcttttggagatcaccagagctgcctg
aaacccttcactgaagacgactttgacttcaacgactctgaaggtgatccagaatcccgt
gagactgactggcttggtggggcagacggcaaaggttcataccaggtgaaaggctggagt
ctgaagaggcaacagtttgtcgcgctgctctggaagcgcttcctctacgcccggcgctcc
aggaaaggtttctttgctcagattgtccttccagcagtgtttgtgtgtatcgccctggta
ttcagcctgattgttcctccatttggaaagtaccccagcttggctctgcatcccagcatg
tatggagaacagttttctttcgtcagcaatgacatgcctgaagaccctcacaccaacaaa
ctgctgggagctctgatggaaaaacctggctttggaagtcgctgcatgaagggagagccc
ataccaaacaccccctgtactgctgttgaagacgagtggtcagtccctgacatctctgag
agtgtcagggacattttcgacaagggcaactggaccaaggagaacccttctcctctgtgt
cagtgcagctgtgaggggagaaagagaatgctgccggagtgtcctgatggagctggcgga
ctcccaccaccacagatgaagatcagtgacaaagacaccctgcagaacctgactggcaga
aatgtatcagactacctggtcaaaacctacgcacagatcattggcaaaagcctgaaaaac
aagatttgggtcaatgagttcaggtatggcggattctcactgggtgcaaggagctcccag
tttctgtctcacaaagaggaaattgatgatgcgattgttcagctgaggaggcgcttccat
cttgaaagaggaactgcatctgatcggtttttccgcagcctgtccagtttcatccaggga
ttggactccaagaataacgtgaagatctggttcaacaacaagggctggcacagcatcagc
tccttcctcaatgtgatgaacaacggcatcctgcgcgcaagtctgccagctggaaaagac
cccagcaagtttggcatcacggcctacaaccacccactgaacctcaccaaggagcagctg
tcacaggtcgcattgatgacgacatcggtggacgtgctggtgtccatttgtgtgatcttt
gccatgtccttcgtgccggccagttttgtggtcttcctcatccaggagcgagtgaacaag
gccaagcacatgcagttcatcagtggagtacagccattcctctactggctggccaacttc
gtctgggatatgtgtaattacatcgttcctgccacactggtgatcatcatatttgtgtgt
ttccaacaagacgcctacgtctcctccaccaatctcccagtgctggccctgctgctcctg
ctttatgggtggtcaatcacccctttgatgtacccggcctccttcttctttaagatcccc
agtactgcctatgtggtcctaactagtgtcaacatactgataggaatcaacggcagcgtg
tcaacatttgttctggagctgtttggaagtaacgagatcgggggcatcaatgacatcctg
aaaaacgttttcctcatcttcccccacttttgcttggggagaggactgattgacatggtg
aagaatcaggccatggctgacgctttggagcgatttggtgaaaaccgtttccgatcgcca
cttgcctgggacatggtggggaaaaacctgtttgcaatggccatagaaggggttgtgttc
ttctgtatcacagtcctcattcagtatcgcttctgcatcaagacgaggtcttccatcagc
cacctgaaaccgattggagaggaagatgaggatgtggccagagagcgtcagaggatcctg
agcggagccgggcagtcagatatcctggagttgagagagctcaccaagatttacaaacgg
aaacagaagccggcagtcgaccggctgtgtgttggcatccctcctggagagtgtttcggt
ttgcttggagtgaatggagcaggcaagaccagcaccttcaaaatgctgacgggagactcc
ttggtcaccagtggcgaggcatacttggcaggcaaaagtgtaaatactgagatagatgag
gtgcatcagaacatgggttactgtcctcagtttgatgccatcaacgacctgctgaccggc
agagaacaccttgaattctatgctattctgagaggagtacctgagaaggaagtctgcgag
gtggcagagtggggcatccggaagctgggattggtcaaatatgtggacaaatcagcaggg
agctacagcggaggaaacatgaggaaactgtccacggccatcgctctcattggaggacct
cctgttgtgtttctggatgagccaacgacaggcatggaccctaaggcacgccgggccctc
tggaatgccatcctgagcatcatcaaagagggacgctctgtagttctgacgtctcacagc
atggaggagtgtgaagctctgtgcaccaggatggccatcatggtcaacggcaggttccgc
tgcttgggcagcgtgcagcaccttaaaaacaggtttggcgatggctacaccatcatcctg
cgagtggcagggccagacccagaccttcggccggtgatgaacttcatcgagcaggagctt
ccagggagcactctgaaagagaagcaccgcaacatgctgcagtaccagctcccctcatcc
ctcacctccctagcccgcatcttctccctcctctcaaagaacaaggagacactctgcata
gaagactattctgtctcccagaccactttagaccaagtgtttgtaaattttgccaaggac
caaagcgatgaggaccatttgaaagacgtccacctgagcaagcgggacgctgttgtagtg
gacgtttcacagctcaactctttcctcattgacagcaagagcagggagagttgtgtctga
DBGET
integrated database retrieval system
