Oryzias melastigma (Indian medaka): 112140402
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Entry
112140402 CDS
T07439
Symbol
ncam1a
Name
(RefSeq) neural cell adhesion molecule 1a isoform X1
KO
K06491
neural cell adhesion molecule
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
oml04514
Cell adhesion molecule (CAM) interaction
oml04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
112140402 (ncam1a)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
112140402 (ncam1a)
04517 IgSF CAM signaling
112140402 (ncam1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oml04131
]
112140402 (ncam1a)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
oml04515
]
112140402 (ncam1a)
04090 CD molecules [BR:
oml04090
]
112140402 (ncam1a)
00536 Glycosaminoglycan binding proteins [BR:
oml00536
]
112140402 (ncam1a)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
oml00537
]
112140402 (ncam1a)
04091 Lectins [BR:
oml04091
]
112140402 (ncam1a)
Membrane trafficking [BR:
oml04131
]
Exocytosis
Tethering complex
Exocyst complex assembly proteins
112140402 (ncam1a)
Cell adhesion molecules [BR:
oml04515
]
Immunoglobulin superfamily
NCAM1/2
112140402 (ncam1a)
CD molecules [BR:
oml04090
]
Proteins
112140402 (ncam1a)
Glycosaminoglycan binding proteins [BR:
oml00536
]
Heparan sulfate / Heparin
Adhesion molecules of cell surface
112140402 (ncam1a)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
oml00537
]
Others
112140402 (ncam1a)
Lectins [BR:
oml04091
]
I-type lectins (Siglecs)
112140402 (ncam1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
Ig_VEGFR-1-like_5th
FN3_DSCAM-DSCAML_C
V-set
VEGFR1-3_N_Ig-like
Ig_PDGFR_d4
C2-set_2
V-set_CD47
Pur_ac_phosph_N
Fn3_ROS1
C1-set
Fn3_VIN3
Receptor_2B4
Motif
Other DBs
NCBI-GeneID:
112140402
NCBI-ProteinID:
XP_024119112
Ensembl:
ENSOMEG00000002424
LinkDB
All DBs
Position
LG14:complement(25024324..25392456)
Genome browser
AA seq
1024 aa
AA seq
DB search
MAMLQMRDIIWGLLFLGCTAAIQVQITPAQGEISVGESKFFLCEVTGEAKDIDWYTPSGE
KILHSMQDLSVSRSDEVTSSLTIYHANVDSAGIYKCVARDGEKEAQATVQVKIFQKITFQ
SAPSPQEFTEGDTADIVCNVVSSPPPTIIWKHKGSKIQASKDVRYKIMANGHLQIRGIKK
TDEGMYTCEARVMARGEIDFKTMKVVVNVLPTIRARQFEVNATADIGSSALLACDADGFP
DPVVTWTHNGAALEEGDKYSLNEDGSELIIKDVKKVDEGDYTCTATNKAGEKSQEVGLNV
FVQPKITYLNNKTASEFDEEVILTCEASGDPTPTISWSSESTIFTEGEQASWTRPDKYES
LDRNIVVYSHARVSSLTLKNVQFTYAGQYLCIASNSIGQDSQSVYLEVRYSPKILGRVAS
YTWEKNPANISCEVDAHPEANVVWFKDGSQLPSANTTNVKIYNMPTVSYLEITPESQIDF
GNYNCTATNELGSESKEFILIPADVPSAPEIQQVESFSSTAMVEFKEPDSTGGVPLLKYR
VEWRFPGKEWTHKEYSVEDGNTKILVTGLKPETAYEVKMSAINGKGEGESSAASSFKTKP
VQYSFTISSETLPAIAATILPLIGEPSAPKLEANLAEEGNSLRVTWIKQDDGGLPIIHYL
VKYKAKHVPEWKPEIRVPSLSEHMTLNGLAWNTEYEVHVVAENQQGRSDPGVVSIKTAAQ
PTAIPGSAHGGSGLGTGAIVGILIVVFFLLLVGVDVTCYFLNKCGLLMCIAVNVCGKAGP
GAKSKDIEEGKAAFTKDESKEPIVEVRTEEEHSPNQEVKTPTEPNETTPLTEAEPAVTET
TPLVVKILPSTATNSVSESFSTAQSSPASESTTLTISTSSPTKAAPSTTSPNSSSTAPPG
AGKTDPQPNVGPLVDLSDCPKAAPPSHQTPPALEPVSPPSDGQQSKGDSVKGRDSAQSKE
SRLDGPTQDAPKAPCTDSPAPVQNDGKIVKDDNAKSETEVKNATTEVKTVPNEAPQANGN
ESRA
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atggccatgctgcaaatgagggacatcatctggggactgcttttcctgggctgcacagct
gctattcaggtgcaaatcactccggcacagggggaaatcagcgttggagagtccaaattt
ttcctctgcgaagtgaccggggaggctaaagacatcgactggtacactcccagcggtgag
aagatcctccattcaatgcaagatctttctgtgagccgcagcgacgaggtcacttcaagt
ctcaccatttatcacgccaatgtggacagcgctggcatctacaagtgtgtggccagagac
ggcgagaaggaagcccaggctacagtccaagtcaagatcttccaaaagatcaccttccag
agtgctcccagtccgcaggagttcacagagggggatactgctgacatagtctgcaatgtt
gtcagctcgccgccacccaccatcatttggaagcacaaaggctccaagatccaggcttcc
aaagacgtgcgatacaagatcatggctaatgggcacctgcagatacggggcatcaagaag
acggatgagggcatgtacacttgtgaggctcgtgtcatggcccgcggagaaattgacttc
aagacaatgaaagttgtagtcaacgtgcttcccaccatccgtgccaggcagtttgaggtc
aatgccacagctgacatcggcagctctgctttgctggcctgcgatgcagatggatttcct
gaccccgtggttacctggacacataacggcgctgcccttgaagagggcgataagtacagc
ctgaacgaggatggctctgaattgattataaaggatgtcaagaaggtggatgaaggcgac
tacacctgcaccgccacgaacaaggccggagagaaatctcaagaagtcggcctgaacgtg
tttgtgcaaccaaagatcacctacctgaataataaaactgcctccgagtttgatgaagaa
gtcatcctgacctgtgaggcttcgggggatcccacaccaactatctcctggagttctgag
agcacaatcttcactgaaggagagcaggcttcttggacgcgaccagacaaatatgagagc
ctcgacaggaacatcgtggtgtacagccatgcacgagtgtcctccctcaccttgaaaaat
gtccagttcacatacgccgggcagtatctttgcatcgccagcaactccatcggtcaggac
agccaatcggtgtacctggaagttcgctactctccaaagatcctgggcagagtggcctcg
tacacctgggaaaaaaacccggccaacatcagctgcgaggtggacgcccatcctgaagcg
aatgtggtttggttcaaagatggctcccaactgccgagcgccaacaccaccaacgtgaag
atctacaacatgccgacagtcagctacctagagattacacctgaatctcaaattgacttt
ggaaactacaactgtacagccaccaatgagttaggatctgaatccaaggagttcattctc
atcccagcagatgtgccatcagcgccagaaatccagcaagtggaatcgttttcgagcaca
gccatggtggagtttaaggagcctgactccactgggggggtcccgcttctcaagtacaga
gtggaatggcgttttcctggcaaggaatggactcataaggagtacagcgtggaggatggc
aacacaaagattcttgtcactggcttgaaaccagagaccgcctacgaggtcaagatgtcc
gccatcaacggcaaaggcgaaggggagagcagcgcggccagctctttcaagaccaagcca
gtccagtattcttttacaatttcctcagagactctgccagctatcgctgccaccattttg
ccccttataggagagcccagtgcgcccaaactggaggccaacctcgcagaagaaggcaat
tctctgagggtgacgtggatcaaacaggacgatggcggtttgcccatcattcattacctg
gtcaagtacaaagctaagcacgtccctgagtggaaaccagagatccgcgtcccgtcgctg
agcgagcacatgacgctgaacggcctggcctggaacacggagtacgaggtccatgtggtg
gcagagaaccagcagggccgatccgaccccggcgtcgtctccatcaaaacagcagcgcag
cccaccgccatcccaggtagtgcacacggtggctccggactgggaactggagccattgtg
ggcatccttattgttgtgttcttcttgctgctggttggcgtggatgtcacctgttatttc
ctgaacaagtgcggcctcctcatgtgcatcgccgtcaacgtctgcggcaaggccggcccg
ggcgccaaaagcaaggacatcgaagaggggaaggcggcattcacaaaagatgagtccaag
gagccgattgttgaggtgagaacggaggaggaacacagccccaaccaagaagtgaagact
ccgaccgagcccaacgagaccactccactgacggaggcggagcctgctgtgaccgaaacc
acccccctggtggtaaaaatactcccctccaccgccaccaactcagttagcgagagtttt
agcacggcacagagtagtcctgctagtgagagcaccaccctcaccatcagcacctccagt
cccaccaaagcggctcccagcactacctctcctaatagcagctccacagcgccccctggt
gctggtaaaactgacccccaacccaatgtggggcccctggtcgacctgagcgactgtccc
aaagccgcccctccctcccaccaaacgcctcctgcactagagccagtcagcccaccttca
gacgggcagcagagcaaaggtgactcggtgaaaggccgggactccgcccagagtaaggag
tcacgactagacggtccgacccaggacgcccccaaagccccgtgcacagactcgcctgca
ccagtccaaaatgatgggaagattgtgaaggatgacaacgctaaaagtgagactgaggtg
aagaacgccaccaccgaggtgaagacggttcccaacgaggctccgcaggcaaacggcaac
gaaagtagagcgtaa
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integrated database retrieval system
