KEGG   Oryzias melastigma (Indian medaka): 112140931
Entry
112140931         CDS       T07439                                 
Symbol
rif1
Name
(RefSeq) telomere-associated protein RIF1 isoform X1
  KO
K11138  telomere-associated protein RIF1
Organism
oml  Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:oml00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:oml03032]
    112140931 (rif1)
DNA replication proteins [BR:oml03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    112140931 (rif1)
SSDB
Motif
Pfam: Rif1_N
Other DBs
NCBI-GeneID: 112140931
NCBI-ProteinID: XP_024119719
Ensembl: ENSOMEG00000021513
LinkDB
Position
Unknown
AA seq 2287 aa
MMAAAGPPSTSGFLPLLETLEDDAAGEAEQIDAYLTIANRLSGDDGRHFLLEVEKHFPRL
GKVFLVHIGSASKELSHAALQALGFCMFYSQVALCVSDVLAAEILSALCSLISKTTKKNT
CTRALWVISKQSFPADVVGKNVPMVLSSLESIWNRSTVPSVVMEHEAINVIIKLLEQVPT
QMGEGAVRWAKLVIPLVVHSASKVRLRAAAAMEMGLPMLLTQQADVAAAIEPVMASKLIP
ELQKLFMSKNETNVLKLWPLFVKLLGKLLHRGGPFINSLLHLEELGFRSSSPTVKKIAFI
AWKSLIDNFALNPEILCSSKRMKLLLQPFLSIHVRTEALLLTKVEVWWYLVVQLGPNLSS
QFDQVSVPLLQSMFGSCSSSGPGTPPSSGHNGSSVPGTPKSGNSTFTSLAITPRMSLGSS
MPAASTFPSIQLLGLEMLLHYLVGPEVVACAAKNKLVLSLEPLTHSLLAGASSFTKHAAV
LVSTITVGFTSIGKDAPESLLAIIWTRLVRFVSMTIESSSKKERQGGEVLTSMLQALQSI
AETLPADRLLVLLERTVKNIPPRVLGSTSYQVGKMDVLNGTPALFLILLVFDSSNLPAFV
EDERFLVCLQTLITCGLSGPTSPLAFVEAVLGAISRSTSSVLKKEQQWRLWSSLVGLLTD
TITQSNEVNQGDALEHNFSAIHSALMFPITHLLGGASLPQAAQKSMLSSWSKLYKVFARC
SALVVTAEENICCEELCSKMAAAVDREALKVPSTLNAIASILHVMVECVDFSPYTPQFQQ
KLKSPHTPMNWARKQSKALGNLSSFQVLLVQCLHAHLEAVEESSEATGSTLLSILSVLFT
NLALTSAIKEALTSVLQPLVLLYEQASGFPTQLLEKVGSPSLWADDTLVAGALKVSVLQL
EKLLGDVLGCLQTHCALAYDSELLAQLTPLLCVLFLHKNKHLRTAVTHFWNATFANSVSL
TYPEEIRPVLSQVKKKTPIILPGFEAVTVPDELSEQFSSESSQLETKLSGIPVSSAGKRD
SMLGKASELKDRSSRKPNKPVSTKLDFDSPRSRNVLEEEASTDFVFIPPETKERVLTEHQ
KEMKRTRRVDIPVMYNNLDASLDTTVFSQYTQSQEDPDKAAAKQNVGGTEETPDEIPPKN
EEDKDVLMQELQERDSTADTETTGSPAQILQDSEKVEEATDNVESKNDTSPNVSSSSDLV
LGTPQKLSSRRQSFITLEKYSDGKPASPSSSSSFPGPHVSCSSQKASSEASACLGSQDSD
PKPSPPDPESPRRPKDCRAKAEPVRLIERLPEDSSEDAGVIPDMQNEKESGDLIPKETNM
KEEPMSEDSPTQTSTEQPRRSGRQRIRPQLPGEDPEEREAKFSHSKRRRSREETKSESPS
RSEARTKPAAEESSGAEGPPIKSSRDSAELSQSTPKGKMGNVTKTFSFVDVFLEKPEPKK
KRTSEPQSSRTQNDSLNSSPEAEISQESPDHTAADLHDGVNDQLSRTAAPQTDVEPQGMR
PEHQDEELEPAEASETNEPSSNIERHSQEEEEEGSEICSRLKDNETEHQIQSENMITGEG
GSEDSLGQDRPPVTPSSDSQMVTPSPDSQTVTPSPDSLPVTPSPDSQTVTPSPDSQTVTP
SPDSQSRLVRKSRRSDPLSETGEFQDNSQHMESVGPRRRSQTALAKELEAESKGVRTRSR
KTLQEPLKSSPKSTPKSSQSLDLSGSDTSQDLRRRSALKTGVTSESPKSASSEGQRTTSL
GPQRRGRKPKVSRSSALESQESRSDVEMTESQEGKAQVAEAAETQNLQEPQREEESSTKT
ETCEVVGSASGAKTAGDGMVPSSEPEDQHALESAGLATPLIQDPDLSADDGVLVPQETEE
RLDVPESSEMSKEVSENTSMDFSTDHQESSGQEHPQEPPAPLPECGAESVSDAGTELGVA
PVQDSNPDGQTLKGDAEASQVSVSKQTEMVLLDTDGAGQESPMRLKCQATEPDIGQSPRG
AWSPSASPSTSILKKAQKRSLEVETPSPLVKSRRVSFANPIQQQETADDIDRRSLAVGTN
SPRRSKGNTTSQSKLVTTPTKGLQVLSPRNLHSPGYKSSKKCLISEMGQEPGAVSRDCIY
PALVGCSAPVEAVLSQISSTMWSRGFGQLVRARNIKTVGDISALTPAEIKTLPIRSPKIS
NVKKALKVFEQQRRGRGAELKGFDETERMTSELEEPDKEETTSAPLATEPVVQPVSSDVP
PELDATALEGNRDPAQGLLGELEALSSRMTPMELSGFSPQQLMDMHAHLGGMMRSVVVEM
QTRLQKL
NT seq 6864 nt   +upstreamnt  +downstreamnt
atgatggcggctgcagggccccccagcacttccggcttcctcccgttgctggagactctg
gaggacgatgctgctggagaggctgaacaaatcgatgcctacctcaccatagccaatcgg
ctgagtggagatgacggacgccacttcctcctggaagttgagaagcattttcctcgtctg
ggaaaagtgtttttggttcacattggcagtgcaagcaaggagctgtcccacgccgccctg
caggctctggggttctgcatgttctactcccaggtggcgttgtgcgtctccgacgttttg
gccgcagaaatcctgtcagcactctgctccctgatctcaaagaccacaaagaaaaacacc
tgcaccagagcattatgggtcatctccaaacagagctttcctgcagacgtggtcggcaaa
aacgtgcccatggtgctgagttctctggagagcatatggaaccgctccaccgtcccgtct
gtggtgatggagcacgaagccatcaacgtcatcatcaagctgctggagcaagtgccgacc
cagatgggggagggggcggtgcgctgggcgaagctggtcataccgctggtggtgcactcg
gcctccaaggtgcgtctgcgagcggctgctgccatggagatgggcctgcccatgctgctg
acccagcaggcggacgtggccgcagccatcgagcccgtcatggcttcgaaattgattcca
gaacttcagaagcttttcatgtctaaaaacgagaccaacgtgctgaagctctggcctctg
ttcgtcaagctgctgggaaagctgctgcacagaggcggccccttcatcaactctctgctg
catctggaggagctgggcttccggagctcctcccccaccgtcaagaagatcgccttcatc
gcttggaaaagcctcatcgataactttgccctgaatccagagatcctgtgcagctccaag
cgcatgaagctgctgctgcagccgttcctgtccatccacgtgaggaccgaagcgctgctc
ctcaccaaggtggaggtctggtggtacctggtggtgcagcttggacctaacctgtcgtcc
caattcgaccaggtgtcggtgcctctgctccaatcgatgttcggatcctgctcctcctcc
ggccctggtactcctcccagttcaggccataatggatcttctgttcctggcacgcccaag
tcaggaaactccaccttcaccagcctggccatcaccccccggatgagtctgggctccagc
atgccggctgcctccacctttccctccatccagctgctgggcctggagatgctgctgcac
tacctggtgggcccggaggttgttgcatgtgcagcgaagaacaaactggtcctgagtctg
gagccgctgacccactccctcctggctggagcctcgtccttcaccaaacacgccgctgtg
ctcgtctccaccatcacagttggcttcaccagcatcggcaaagacgctccagagtccctg
ttggccatcatctggacccgcctggttcggtttgtcagcatgaccatagagtctagcagt
aagaaggagcgtcagggcggtgaagttctcacatccatgcttcaggcgctgcagagcatc
gcagagactctgcctgcagacagactgctggttctgctggagcgcactgtgaagaacatc
cctcccagagtcctcggctccacctcctaccaagttgggaagatggatgttttgaatggc
acgccggcgttgttcctcatcctcctcgtcttcgacagcagcaatcttcccgcctttgtg
gaggatgagagattcctcgtctgcctccagactttgatcacctgtggcctgtctggcccc
acctccccgctggcgttcgtggaggccgtgctgggggccatcagccgcagcacgtcgtct
gtgctgaagaaggagcagcagtggaggctgtggagcagcttggtgggcctgctgacggac
accataacacagtccaatgaagtcaaccaaggtgacgctctggagcacaacttcagtgcc
atccattcagctctgatgttccccatcacccacctgctgggcggagcttcactcccacag
gcggcccagaagtccatgctgtcctcgtggtccaagctgtacaaggtgttcgcccgctgc
tccgccttggtggtgacggccgaggagaacatctgctgtgaggagctctgctccaagatg
gcagccgccgtggacagagaggctctgaaggttccttcaacgctgaacgccatagccagc
atcctgcacgtgatggtggagtgcgtggacttctctccgtacactcctcagttccagcag
aagctcaagtctcctcacacgccgatgaactgggcgcggaagcagagcaaagctctgggg
aacttgtcctccttccaggttctgctggtgcagtgtctgcatgctcacctggaggcggtg
gaggagtcctctgaggccacaggctccaccctgctctccatcctgtccgtgctcttcacc
aacctggccctcaccagcgccatcaaggaggcgctaacctccgtgctccaaccgctggtg
ctcctctacgagcaagcgtccgggttcccgacgcagctcctggagaaggtgggctctccg
tcactgtgggcggatgacacattagtggctggagccttaaaggtttctgtcctgcagctg
gagaagctcctgggcgacgtgttggggtgtctgcagactcactgcgctctggcgtacgac
agcgagctgctggctcagctcacgcctctgctgtgtgtgctgttccttcacaagaacaag
cacctgcgcaccgccgtcacacacttctggaacgccacttttgccaactcggtcagcctg
acgtaccctgaagagatcaggcctgtcctgagccaggtgaagaagaagactcccatcatc
ctccctggctttgaggcggtgactgttcccgatgagctcagcgaacagttttctagcgag
agttcccagctggagaccaagctgagcgggatcccggtctcctctgcagggaagagagat
tccatgctgggaaaagcttctgagctgaaggacaggagctccaggaaacccaacaaacca
gtttctacaaagctggactttgactccccgcgaagccggaacgttcttgaagaagaggcc
tccaccgactttgtcttcattcctcctgagacaaaagagcgagttctgacggagcatcag
aaagagatgaagcggaccagaagggtggatattcctgtcatgtacaacaacctggatgct
tctctggacactacagtgttcagccagtacacccagagccaagaagacccggacaaagca
gcagctaagcagaatgtcggagggacagaagaaactccagatgaaattcctcctaagaat
gaagaagacaaagacgttctgatgcaggagctccaggagcgagacagcactgctgacaca
gagaccacaggaagccctgctcagatcctccaggactctgagaaggttgaggaggccaca
gacaatgtagagtctaagaatgacacaagtcccaacgtctcctcgtcttcagatctggtg
ttggggactccacagaagctcagcagtcgacgtcagtccttcatcactctggagaagtac
agcgatggcaaaccagccagccccagcagtagctcctcgtttcctggccctcatgtctcc
tgcagcagccagaaggcttcctctgaagcttccgcttgtctgggctcacaggattctgac
ccgaaaccaagtccgccagacccagaatccccccgcagacctaaggactgcagggccaaa
gcggagcctgtgcggctgattgaacgactgccggaagactccagtgaggatgccggggtg
attcctgacatgcagaatgaaaaggagagcggggatttgatcccaaaagaaaccaatatg
aaggaagaaccaatgtcggaggattcaccgacccagacatccacagagcaacccaggagg
tctggacgccagagaataaggccccagcttcccggagaagacccggaggagcgggaggca
aagttctcccattccaaacgcagacgttctagagaagaaaccaaaagtgagtcaccaagc
agatctgaagcaagaaccaaaccggctgctgaggagagcagcggcgccgaagggcctccg
atcaaatctagcagagactctgcagagttgagccagagcacccccaaggggaagatgggc
aatgtcaccaaaaccttcagctttgtggatgtcttcttagaaaaaccagagcccaagaag
aaaaggaccagtgagccccagtccagccggacccagaatgactcactcaactccagtcca
gaagctgaaataagccaggaaagtcctgaccacaccgctgcagatctacacgatggagta
aatgatcaactgagcagaactgctgctcctcagaccgacgttgagccacaggggatgagg
ccggaacaccaggatgaagaactagagcctgctgaggcatcggagacgaacgaaccttca
tcaaacattgaaagacattcccaggaggaggaagaggagggctctgagatctgttctaga
ctgaaagacaatgaaacagaacaccagatacagagtgagaacatgatcacaggagaggga
gggtctgaggacagcctcggtcaggacaggcctccggtaacaccttcatctgatagtcag
atggtaacaccttcacctgatagtcagacggtaacaccttcacctgatagtctgccggta
acaccttcacctgatagtcagacggtaacaccttcacctgatagtcagacggtaacacct
tcacctgatagtcagtcaagacttgtgaggaaatccagaagaagtgatccactgtcagag
actggggagtttcaggataacagtcaacatatggagtctgttggaccacggagaaggtct
cagaccgctttagccaaggaactcgaggctgaaagcaaaggtgtccgaaccagaagtaga
aaaactctacaggagcctttaaaaagtagtcccaagtcgaccccaaagagttctcagtct
ctagatctttctggaagcgacacttctcaggatttgcgaagaagatccgcactaaaaacg
ggagtcacttcagagtccccaaaatctgcatcctctgagggacagagaactacctcactg
gggccccaaagaagagggaggaagcctaaagtctctcggtcttctgccttggaatcccag
gagagtaggagtgatgtagaaatgactgagagtcaagaaggaaaagcccaggtagcagaa
gcggcagaaacccaaaatctacaagaacctcaaagagaagaagagtcctcaacaaagacg
gagacttgtgaggttgttggctcagcctctggtgctaagacagcaggggacggcatggtg
ccaagctctgagcctgaagaccagcacgctctggagtccgctgggctcgccactcctctg
atccaggacccagacttgagtgctgatgatggcgtgttggtccctcaagagacagaagaa
agactggatgtgccagagtcatcagagatgtctaaggaagtgtcggaaaacacgtcaatg
gacttcagtacagatcaccaggagtcttcaggtcaggagcatccacaggagccaccggcc
cccctcccagagtgtggggcagagtctgtctcagatgcaggaacagagcttggagttgca
cctgtgcaggacagtaatccagacgggcagactttaaagggggatgcagaggcttcacag
gtcagcgtctccaaacagacggagatggttctgctcgacactgacggggcggggcaggag
tccccaatgaggctcaagtgccaagcgacggagccagacattggccaaagtcccagaggt
gcctggtctccgtcagcctcaccctccaccagtatcctcaagaaagcccagaagcgatcc
ctggaagtagagactccctctcctcttgtcaagtccaggagagtgtcctttgctaaccca
atccagcagcaggagaccgcagatgacattgaccgccgtagtctggctgtcggcaccaac
tcccccagaaggtccaagggcaacaccacctcacagtcaaagctcgtgacaactccaacc
aaaggcttacaggtgctgagtcccagaaatctgcacagtccggggtacaagagctccaag
aagtgtctgatctcagagatgggtcaggagcctggagccgtgtccagagactgcatctat
cccgccctggttggctgctccgctcctgtggaggcggtgctctcccagatctcctccacc
atgtggtctcgagggtttggacagctcgttcgcgcgaggaacatcaaaaccgtgggtgac
atcagcgccctgacacctgccgagattaagacgctgcccatccgttccccgaagatctcc
aacgtcaagaaggccctgaaggtctttgagcagcagcggagaggacgaggagccgagctg
aagggctttgatgagacggagaggatgacctcggagctggaggagcccgacaaagaggag
acgacctcagcaccgctcgccacagagccggtggtccagccagtctcctcagacgttccc
cccgagctggacgccacggcgctggaggggaaccgggaccccgcacaggggctgctgggg
gagctggaagccctgagttccaggatgacgccgatggagctgagcggtttctcgccgcag
cagctgatggacatgcacgctcacctgggaggcatgatgaggagcgtggtggtggagatg
cagacccgcctccaaaaactgtga

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