KEGG   Oryzias melastigma (Indian medaka): 112140962
Entry
112140962         CDS       T07439                                 
Symbol
lig3
Name
(RefSeq) DNA ligase 3
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
oml  Oryzias melastigma (Indian medaka)
Pathway
oml03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:oml00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    112140962 (lig3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:oml03400]
    112140962 (lig3)
Enzymes [BR:oml01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     112140962 (lig3)
DNA repair and recombination proteins [BR:oml03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     112140962 (lig3)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C RNA_ligase BRCT_2 mRNA_cap_enzyme
Other DBs
NCBI-GeneID: 112140962
NCBI-ProteinID: XP_024119769
Ensembl: ENSOMEG00000001498
UniProt: A0A3B3CWZ0
LinkDB
Position
LG14:27909995..27924216
AA seq 1009 aa
MQRHLLTSIHRTLCLVRQPSGSFVRRQQLSFVCRVASLPSADQLPSSFSAERLSQQTRFF
HSIPPKPSLLRSSAPWLFLRRCFSLPLDMSEQRFLVEYAKRGTAGCKKCKDKIPKGIVRI
GKIVPNPFSESAGEMKEWYHVKCIFEKLERARATTKKIEDITDLEGWEELQDEDKELINK
HVSDLMAKVNASPKKKVQAKLNPTGQLMAPPADPSVNAPRKFSGFTAAKAGSSAAISSPP
AAAAGQGSALSTQLCDPKHKDCLLREFRKLCAVVAENNSYNTKTQIIEKFLKKGTGGDKF
HGDLYLTVKLLLPGVVKSVYNLNDKQIVKLFSRIFRSNQEDMVRDLEQGDVSETVRMFFE
ESKSFPPASKSLLTLQEVDESLTRLAQLTKEDEQQNELEAIAKKCTSNDLKCIIRLIKHD
LKMNAGAKHVLDAVDPNAYDAFKASRNLGDVIQRVLRNQQEASNGSGPRKLLTVEASLMT
PVQPMLAEACKSIDQAMKKCPNGMYAEIKYDGERVQVHKSGDSFSYFSRSLKPVLPHKVA
HFKDYIPQAFPGGHSMILDAEVLLIDTKSSKPLPFGTLGIHKKAAFQDANVCLFVFDCIY
FNGVSLMERPLKERRKFLTDNMVEVPNRILFSEMKHVTRAGDLADMITRVIREGLEGLVL
KDIKSTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPD
SKKWCTVTKCSGGYDDAMLARLQKELDVIKISKEPGKIPGWLKIVKNYYPDFIIRDPERA
PVWEITGAEFSKSEMHTADGISIRFPRMTRIRDDKDWKTATNLHQLRELFRISKEHCDFK
VTAGPSTADDNKGSSGGDSGGSSPSPSSNRSAPPQKTPNRTPTKAKPQKSEPRTPGSEAS
SAKKMKKSENVNSNGQSKPKVTPQLLEPRNDKTLLDIFSGVKLFLPASIQDSDRLRRYFV
AYDGDLVADYEAASATHTLAPPEEDSRAQRVSPSWIWECIRKRRVVPPC
NT seq 3030 nt   +upstreamnt  +downstreamnt
atgcagagacatctcctcacatcaatccataggactctctgtttagttcgacaaccttct
ggttctttcgttaggcgtcagcagctctcttttgtgtgcagagtcgcttctttgccttct
gctgaccagctcccctctagtttttctgcagaaagactctcacagcaaacccgttttttt
cactcaatcccccccaaacctagcctcctccgctcctctgctccctggctgttcctgcga
cggtgtttctctcttccactcgacatgtcggagcagaggttcctcgtggagtacgccaaa
cgcggcaccgcgggctgcaagaaatgcaaggacaaaatcccgaagggcatcgtgaggatc
ggcaaaatcgtgccaaatcccttcagcgagtctgctggggagatgaaggagtggtatcac
gtgaagtgcatattcgagaagctagagagggcgagggccaccacgaagaagattgaagac
atcactgatctggagggctgggaggaactgcaggacgaagacaaggagctcattaacaag
cacgtttcagacttgatggccaaagtcaatgcaagccccaaaaagaaagttcaagccaag
ctgaaccctacaggtcagctcatggctccccccgccgacccatccgtcaacgctccacga
aagttctcaggcttcaccgctgcgaaggccggcagctccgcagcgatctcatcgccgcct
gccgctgcagccgggcaaggcagcgctctgtccacccagctgtgcgaccccaaacacaag
gactgcctcctccgggagtttcgcaaactctgcgccgtcgtcgctgaaaacaacagctac
aacaccaagacgcagattattgagaagtttctgaagaaagggacgggtggagataagttc
catggagatctttacctgacggtgaaactgctgctgccgggcgtcgtgaaaagcgtctac
aacctcaacgacaagcagatcgtgaaactcttcagccgcatattcagatccaaccaggaa
gacatggttcgagacctggaacagggcgacgtgtcagagacggtccggatgttctttgag
gagagtaaatcctttcctcctgcatccaagagcctcctcacccttcaggaagtggacgag
tcattgacccgcctcgcccagctgacgaaggaggacgagcagcagaacgagctggaagcc
atcgccaaaaaatgcaccagcaatgacctgaaatgcatcatcagactgattaagcacgac
ctgaaaatgaacgccggagcgaagcacgtgttggacgccgtggatccaaacgcctacgat
gctttcaaggcctcccggaacctgggcgacgtcatccagagggttctgaggaaccagcag
gaggcgtcgaacgggtcgggaccccggaagctgctgacggtggaggcgtcactcatgacc
cccgtgcagcccatgctggcagaagcttgtaaatccatcgaccaggccatgaaaaagtgt
cccaacgggatgtacgccgagatcaagtacgacggcgagcgggtgcaggtccacaagagc
ggcgactcgttcagctacttcagccgcagcctcaaacccgtgctgccgcacaaggtggcc
catttcaaagactacatccctcaggcctttcctggaggacacagtatgattctggatgct
gaggtcctcctaattgacacaaagagcagcaaacctctgccctttgggactttggggata
cacaagaaagccgcctttcaagacgccaacgtgtgcctttttgttttcgactgcatctac
ttcaatggcgtgagcctcatggagcggcctctgaaggaacgcaggaagttcttgaccgac
aacatggtggaagttcccaaccggatcctcttctcagagatgaagcacgtcaccagagca
ggagatctggctgacatgataactcgggtcatcagagaaggactcgaaggtctggtgctc
aaagacatcaagagcacctacgagccaggcaagcgccactggctgaaagtgaagaaggac
tatctgaacgaaggcgccatggcggacacggctgacctggtggtgctcggcgctttttat
gggaaaggatccaacggtggcatcatgtccagtttcctgatgggctgctacgatcccgac
tcaaagaaatggtgcaccgtgaccaagtgctccggaggatacgatgacgccatgttggcc
cggctccagaaggagctggatgtgattaaaatcagcaaggagcccggcaaaatccccggc
tggctgaaaatcgtgaagaactattatccagacttcatcatccgcgaccctgagcgagcg
ccggtctgggagatcaccggcgccgagttctccaagtcggaaatgcacaccgccgacggc
atctccatccgcttcccacgcatgacgagaatccgtgacgacaaagactggaagaccgcc
accaacctgcaccagctcagggagctgttccgcatctccaaggagcactgcgactttaaa
gtgacggccggcccgtcgaccgccgacgacaacaaagggtcctcagggggggacagcggg
gggagctcgccgtcgccctcctccaacagaagcgcccccccacaaaagacccctaacaga
acgccaacgaaagcaaagccgcagaagtcggaaccccgcacacccggctcagaagcttcc
agcgccaaaaagatgaagaaaagtgaaaatgtcaacagcaacgggcagagcaaacccaaa
gtgaccccccagctgctggagcccaggaacgacaagacgttgctggacatcttcagcggg
gtgaagctcttcctgcccgcctccatccaggactccgacagactccggaggtacttcgtg
gcgtacgacggagacctggtggcggattacgaggccgcctccgccacgcacacgctggcc
ccgcccgaagaggacagccgggctcagagggtgtcgcccagctggatctgggaatgcatc
cggaagaggcgcgtggtgccgccctgctga

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