Oryzias melastigma (Indian medaka): 112141152
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Entry
112141152 CDS
T07439
Symbol
nup160
Name
(RefSeq) nuclear pore complex protein Nup160 isoform X1
KO
K14303
nuclear pore complex protein Nup160
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112141152 (nup160)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112141152 (nup160)
03036 Chromosome and associated proteins [BR:
oml03036
]
112141152 (nup160)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
112141152 (nup160)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
112141152 (nup160)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_Nup120_160
TPR_NUP160_120_M
TPR_Nup160_C
NUP160_helical
HEAT_Nup120
TPR_2
TPR_1
WD40_WDHD1_1st
Motif
Other DBs
NCBI-GeneID:
112141152
NCBI-ProteinID:
XP_024119990
Ensembl:
ENSOMEG00000015097
LinkDB
All DBs
Position
LG6:complement(7945947..7963732)
Genome browser
AA seq
1404 aa
AA seq
DB search
MAALDRSYIEICGFERSGARRCREVTVNLAGVSCLPVGLKVPDGAGAFHYEESGNLPTVT
SNRFIHWITSGDTVQLVEESLDGNLLNNAVKLKFTHCSVLPGGVSIQETLNNVIILICTN
QSVHRVLLPHPARMYRTELVSDLHMQSIFTDVGKLGLQEWPHSAVIPSLPGLSGSLSAAA
AWLSFQGEAHFALASPAGGITVVTLPPHDTQGELSVVELKRSSMMRRISGWMPTAIRGEQ
SPGDLVLSMAVRELEEDSFIFALCQDHRLRMWSLREQACLLEIDVLDYMPACRGVKRLSG
QGHRLRLAFSPSTGLCLCVYLAVPQKGQFTIFQLVGTDNNRYSLEHISSLFSTVNLMSVG
QETLVDFALTSSDVWALWVDDSNATVVKYISFEQSASGQWNQVFVQPLPEEEVPVGMDLD
PRETYLDVLFSPLHFSAAAIIKALQIYGRGSEELLDSSWETLKKEVTLAVESELQSSVTE
FEFSQEEYRQLQVEFWSRFYSCCLQYQEALSSPLGLTVDPHTGMGCLLRKGFVSFLLPCF
AVDHLYLSFDQYLMSEEDTPITEDPDVGRDVLQLVQCLRLLSDSVSGEMAYEMEKALEYL
QTPERAADRVMENMLVNDSKNVMADIQNIMQDVRNPTTAMMVLLRELDLETDLELGGEGS
ALPGQTLSSRLSLSRLYSSTTAVSLLGQAVCHMAMTRAMFCRDLLILQKLYLHFGDNVFL
GGGNQLLQLQQDLIPRTSHLLSSYHLLKHISRSLASTVAMDTIDVNLQSLTALELTDTPS
VCSGRLGLSPQTMVELFYQTAGRRLIVSQMFSHQQIPSLLLWSPVISSVVQLLAQLLWPS
NPGFQFPECLLAGCQFMQLQEYVRLISPWCQVNVGSCRFVLGQCYLANGEGQKALQCFHE
AATEVEKEDFLMKLTASEDEDVPPRLQYYNKVLRLLEDAGLPELVVQLASLAVSEAGGGV
VSQAALWTRMFKHHLDLGHNSEAYEALTQNPDSSMQLDCLRQLVVVLCERSQLRDLVQFP
YVNLHDEVVNIIESRARGLDLLTHNYYELLYAFHIARHNYRKAGTVMFEFGMRLGREVRT
RLGLQKQVNCYLAALNCLRLIRPEYAWIVQPAARNTYMRAGASPKRNSDGDILAEPATGR
QQVDILELQNLEKEYFLSRSRLTLAQHHPPSAAVAGAVSEAELVALLVQNGLFDSALSLC
HTFKLDLTPVFEGLAFKCIKLQLGGEEAQNEAWSWLAANHLSVINTKESSAADEAWRLLA
CYLDRYPSTNGQHHRLVINKLLSHGVPLPDWLIQSYKRADAPSLLRLLLNFDQLESAAEL
VLEYVDAVLGRGHQYFGIQNPLSATSPPAWLPYTAIDQLLRALSETQTHSALHSRVQDKL
DEYHRTVRQLSTLRLTTQRRPITT
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctggaccgcagctacatcgagatatgcgggttcgaaagaagcggcgcgcgc
cggtgccgagaggtgaccgtgaatctggcaggagtcagctgtctccccgtggggttgaag
gttccagacggcgccggagcgtttcattatgaggagagcgggaacctgccgactgtcacc
agcaacagattcatccactggatcacgtcgggagacacggttcagctggttgaggagtct
ctggatggcaacctcctgaacaatgcagtcaagctcaagttcacccactgttctgtcctg
cctgggggggtcagcatacaggagaccctcaacaatgtcatcatcctcatctgcaccaat
cagagcgtccacagagtgctgctgcctcatcctgctcgcatgtaccgcactgaactggtg
tccgatctgcacatgcagtccatcttcaccgatgtggggaagctgggtcttcaggagtgg
cctcacagcgccgtcatccccagcctgccgggactgtcggggagtttgagcgccgccgcg
gcctggctcagcttccagggagaagctcactttgctctggcatcaccagctgggggcatc
actgtggtgacactgccaccccatgacacacaaggtgagctgtctgtggtggagctgaag
aggagctccatgatgaggaggatctcgggctggatgcctacagccatccgaggggagcag
agtccaggagacctcgtcctcagcatggctgtcagagagctggaggaagactccttcatc
ttcgctctatgtcaggaccaccgactccgcatgtggtctctcagggagcaggcgtgcctt
ctggaaatagacgttctggactacatgccggcctgcagaggtgtgaagcgcctttctggt
cagggtcaccgcctgcggctggccttctccccctccaccggcctctgcctctgcgtttac
ctggctgtccctcagaagggacagttcaccatctttcagctggtgggcaccgacaacaat
cgctacagcctggagcacatctcctccctgttcagcacagtgaacctgatgtctgtcgga
caggagacgctggtggactttgctctgacctcctcagacgtctgggctttgtgggtggat
gactccaacgccacagtggtcaaatacatcagttttgagcagagtgcatcaggtcagtgg
aatcaagtgtttgttcagccactgcctgaggaagaagttcctgtgggcatggatctggac
cccagggagacctacctggatgtcctgttctctcctctgcacttcagtgctgcagccatc
atcaaagcgttgcagatctacggcagaggctcagaggagctcctggattcctcctgggag
actctgaagaaggaagtaacgctggcggtggagagcgagctgcagagcagtgtcacagag
ttcgagttctctcaggaggagtaccgtcagctgcaggtggagttctggtcccggttctac
tcctgctgtctgcagtaccaggaggcgctgtcgtctcctttgggcctgacagtagacccg
cacacagggatgggctgtttgctgcgaaagggctttgtgtccttcctgctgccttgcttt
gcggtggatcacctgtacctgtcctttgatcagtatctgatgtctgaggaagacaccccc
atcactgaagacccagatgtgggtcgggacgtcctgcagctggttcagtgtctgcggctg
ctcagcgactccgtctctggggagatggcttatgagatggagaaggctctggagtacctg
cagacccccgagagagcggcggaccgggtcatggaaaacatgctcgtcaatgacagcaaa
aacgtgatggcagatatccagaacataatgcaggatgtgcggaatccgacaacagccatg
atggttctgctcagggaactggacctggaaactgacttggagcttgggggggaaggatct
gcattgcctggtcagaccctgagctccaggctcagcctgtctcggctgtacagcagcacc
accgccgtttctcttttgggtcaggccgtttgccacatggccatgacccgggcaatgttc
tgcagagacctcctcatcctgcagaagctctacctgcactttggagacaatgtgtttctc
ggaggaggaaaccagctgctgcagctccagcaggatctgatcccccggacgtcccacctt
ctctcctcctatcacctactcaaacatatcagtcgcagcctggcctccactgttgccatg
gacaccatagacgtgaacttacagagcctcacagccttggagctgacagacacaccaagc
gtctgctccggccgactgggcctcagtcctcagacgatggtggagctcttctaccagact
gcaggaaggaggctcatcgtctcccagatgttctcccaccagcagatcccctccttgctc
ctctggagtccagtgatctccagcgtggtccagctgctggctcagctgctttggcccagt
aaccctggtttccagttccctgagtgtctgctggctggctgtcagttcatgcagctgcag
gagtacgtgcggctgatcagcccctggtgtcaggtgaacgtgggctcctgtcgtttcgtt
ctgggtcagtgttacctggccaacggggaggggcagaaggctctgcagtgtttccatgaa
gcggccacagaggtggagaaagaggacttcctgatgaagctgacggccagcgaggatgag
gacgttccacccagactgcagtactacaacaaggttttgaggcttctggaggacgcaggt
ctgccagagctggtggtccagctggcctctctggctgtctcagaggcaggagggggcgtg
gtcagtcaggccgctctgtggacaaggatgttcaagcaccatctggacctgggacacaac
agtgaggcctatgaagctctgacccagaacccagacagcagcatgcagctggactgtctc
cgtcagctggtggtggttctgtgcgagcgctcccagcttcgagatttggtccagttccct
tatgtgaacctgcatgatgaggtggtgaacattatcgagtcccgggcccgaggtctggac
ctgctgacccacaactactacgagctgctgtacgctttccacatcgcccggcacaactac
aggaaagcggggacggtcatgtttgagtttggaatgcgtctgggccgggaggtccggacc
cggctgggcctccagaagcaggtgaactgttacctggctgctctcaactgtctgaggctc
atcaggcccgagtacgcctggatcgtccagccagccgccaggaacacgtacatgcgggcg
ggggcgtcaccaaaaagaaactcagacggagatattcttgctgaaccagctacagggagg
cagcaggtggacatcctggagctccagaatctagaaaaggagtacttcctgtcccgcagc
cgcctgacgttagctcagcaccacccaccctctgctgcagttgcaggcgctgtgtcggag
gcagaactcgtcgccttgctggtccagaacggcctttttgactcggctctgtctctctgt
cacaccttcaagctggacctgactccagtctttgagggactagccttcaagtgcattaag
ctgcagttgggtggggaggaggctcagaatgaagcctggagctggttggccgctaatcat
ctgtctgtcatcaataccaaagagtccagtgctgcagatgaggcgtggcgcctgctggcc
tgttacctggacaggtatccttccactaatggacagcatcatcgccttgtcatcaacaaa
ctgctgtcacatggggtgcctctgcctgattggctcatccagtcctacaagcgtgccgac
gcgccttctctgctgcgcctgctgctgaactttgaccagctggagagcgccgctgagctg
gtgttggagtacgtggatgctgttttaggtcgtggtcaccagtactttggaatccagaac
ccgctgtcagccacctcaccgccggcgtggctgccgtacaccgccatcgaccagctgctg
cgcgccctgagcgagacgcagacccacagtgcactccacagcagagtccaggacaagctg
gacgagtatcacagaacagtacggcaactgagcacgctcagactcaccacgcaaagacgg
ccgataaccacatga
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integrated database retrieval system
