Oryzias melastigma (Indian medaka): 112141156
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Entry
112141156 CDS
T07439
Symbol
lamb1a
Name
(RefSeq) laminin subunit beta-1a
KO
K05636
laminin, beta 1
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04510
Focal adhesion
oml04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112141156 (lamb1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112141156 (lamb1a)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
TPR_10
Motif
Other DBs
NCBI-GeneID:
112141156
NCBI-ProteinID:
XP_024119998
Ensembl:
ENSOMEG00000015777
UniProt:
A0A3B3CAF6
LinkDB
All DBs
Position
LG6:7709744..7753923
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AA seq
1792 aa
AA seq
DB search
MTMALLHIFLLLALQESTWAQEGSVEEVLDNEGLPELSDVCTEGSCYPATGDLLIGRAHQ
LFATSTCGLTQPEPFCIVSHLQEEKKCFLCDSTVPFEEWANHTNSHRIENVVTTFGPNRL
KTWWQSENGLENVTIQLNLEAEFHFTHLIMTFKTFRPAAMVIERSADFGKTWQVYRYFAY
DCESAFPSVPQGPMQKVDDVICDSRYSDIEPSTEGEAIYRVLDPAFRIDDPYSPRIQNLL
KITNLRVKFTKLHTLGDNLLDSRMEIKEKYYYAVYDMVVRGNCFCYGHASECAPVQGAAQ
IMEGMVHGHCMCNHNTKGLNCEQCQDFYHDLPWRPAEGRNTNACKKCNCNQHSDVCHFDM
AVFVASGGVSGGVCDNCQHNTAGHKCEQCKPFFYQHPERDVRDPNICQPCNCDPLGSVNG
GLCEGMTDVRAGLIAGQCRCKVNVEGERCDRCRPAHYGLSDEPEGCKACTCSPLGTAPGG
NPCDSQSGNCFCKRLTTGRDCDQCVPEHWGLSNDMDGCRPCDCDLGGAIHNQCDQMSGQC
VCRDHMFGRRCDQIESGFYFSTLDHYTYEAEDAKFGPGVLLVPRPHPQDRSPTWTGIGLV
NVPEGAFLEFTIDNIPYSMEYNILIRYEPQLPDQWEEVLMTVMRPGPIRADSRCVNTVPD
DDNQMTSLQPGSRNVVLPRSVCFESGLNYTIRLSLPRYSALGDVHSPYTLIDSIVLMPDC
QNLDMFTASEGGESSSWEIFQRYRCLENSQSVVKTPMTDICRNFIFRISAVLHQGAKECQ
CDPQGSLSTVCDPNGGQCRCRPNVVGRSCDRCAPATFQFGPSGCIACECDPLGSQSLFCD
QLTGQCVCVVGAYGRQCDRCLPGHWGFPACRPCSCNGHTETCDPDTGSCLHCRDHTAGHS
CERCLDGYYGDPVLGSGDHCRPCMCPDGPESLRQFAGSCFRSDDSQQAVCVCSTGYRGSR
CDECAPGYHGNPNEVGGQCVPCQCNNNIDMLDPESCDRQTGECLRCLYHSEGTACQDCKL
GYYGNALLQDCRKCVCNHLGSSPSSCSPSGDCHCNRSSGQCPCLPNVTGQYCDRCAPDTW
NMASGLGCQSCDCDPKHSYGTSCNQISGQCSCQPGFGGRTCNECKELFWGDPEVKCYACD
CDPRGISEQQCNKATGRCVCVEGVSGPRCDTCARGFSGVFPDCQRCHQCFAEWDDVIGQL
TNQTHRLVNKVNALKASGVSGPHKKHFDSMQKSAAEIQVILDQNLASQPLTEIQQLLQQA
SDLMGTLSQTLNRTEQTLVDLEDQNSVTKTEVDSLMSDTQKLDETVQELQLQVQFIKNSN
IRGASDSITKYFLQSQAAEARANASTVDSGSPTELSAELRQLTLDTLNQTQENFTSRHTE
HAQNLDELAGELQTLDLSWLNQKTCGGSSSAQDSCRSPCGGLGCEGKSGCGGEGCDGAVT
AANTVLMKAQESEQDIANALEEVDQLSKMVLEAKLQADEAKLNAQNVLKNANRTKLKVDQ
SNEELRSLIRQIRDFLTQDAADPDSIEHVANEVLALQMPTTPAQLQNLTDEIRLKVGELG
NVESILEQSTENIQRAEALLEQARRAREEASGVKDSADKVKQVLEEVQKAQTSVGSAIQQ
ATAEIQNTKELLSSVELETASAELKVNNATVRLQKLDEDVMLLRSRNLNVSVSTNRTGQE
AAVIQNMADEVKQELQSEVKQKVSTVEQLIDQKAVGVAQAKDRAESLQKEAKELLLQAAD
KLQILKDLEASYEDNQHVLEVKAEQLVELEAAVKELLQDISHKVSLYSTCLF
NT seq
5379 nt
NT seq
+upstream
nt +downstream
nt
atgactatggcgctcctgcacatcttcctgctgcttgctctgcaagagtccacctgggct
caagagggttcagtggaagaagttttggacaatgagggccttccggagctcagtgacgtg
tgcactgaaggcagctgttacccagcaaccggggacctcctgattggccgagcccaccag
ctgtttgccacttccacctgcggtctgacccagcccgagcctttctgcatcgtcagccat
ctgcaggaggagaaaaagtgttttctgtgtgactccactgtgccgttcgaggagtgggcc
aaccacaccaacagccaccggatcgaaaacgtggtgacgacatttggcccaaaccggcta
aagacctggtggcagtctgagaacggtctggagaatgtcaccattcagctgaaccttgag
gcggagttccacttcactcatctcattatgaccttcaagacgttccgacctgccgccatg
gtgatcgagcgctcagcagactttggaaagacgtggcaggtttaccgctactttgcctac
gactgcgaatctgccttcccttcagttcctcagggtccgatgcagaaggttgacgacgtc
atctgtgactcgcgttattccgatattgagccgtccactgaaggagaggcgatttacaga
gttttggacccggcatttcggatagatgacccttacagtccacgaatccaaaatctgctc
aagataaccaatctgcgagtcaagttcaccaagcttcacacgctgggagacaacctgctg
gactcacgcatggagatcaaagaaaagtactactatgctgtctacgacatggtggtcaga
ggaaactgcttctgttatggacatgcctcggagtgcgcccccgtccagggagctgcccag
atcatggaggggatggttcatggtcactgcatgtgtaaccacaacactaaaggactcaac
tgtgaacagtgccaggacttttaccatgaccttccctggagaccagccgagggacgcaac
accaacgcctgcaaaaagtgcaactgcaaccagcactcggacgtgtgtcactttgacatg
gcggtgtttgtcgcctctggaggtgtcagtgggggagtttgtgacaactgccagcacaac
acagcaggacacaagtgtgagcagtgtaagccgttcttctaccagcatcccgagagagac
gtcagagaccccaacatctgccagccctgtaactgtgatccccttggctcggtgaacgga
ggactttgtgaaggaatgacggacgtccgagctggtctgatcgctggacagtgccgctgt
aaagttaacgtggagggcgagcgctgcgaccgctgcaggccggcacattacgggctgagc
gacgagcctgaaggttgcaaagcgtgcacctgcagtcctctgggaactgctcctggagga
aacccgtgtgacagccaatcaggaaactgcttctgcaaacgtttaacgactggacgagac
tgcgaccagtgtgtgcctgaacactggggtctgagtaacgacatggacggatgcagaccc
tgtgactgtgatcttggtggagcgatccacaatcagtgtgaccagatgagcggccagtgt
gtttgcagagatcacatgtttggtcggcgctgtgatcagatcgagtctggattctacttc
agcactttggatcactatacctacgaagccgaagatgccaagtttggacctggggtcttg
cttgtcccgaggcctcatcctcaggaccgcagtcccacatggacgggtatcggcctcgtc
aatgttccagaaggagcctttctagagttcactatagacaacatcccatactccatggag
tacaatatcctgatccgatacgagcctcagctcccggaccaatgggaggaggttctgatg
acagtgatgaggcctggaccaatcagagcggacagccgctgtgtcaacactgtgccagac
gacgataaccagatgacctcgctgcagcccggctcacggaatgtggttctccccaggtca
gtgtgctttgagtccggcttgaactacacgatccggctcagtttgcctcggtactctgcg
cttggagatgttcattctccgtacacactcatcgactcgattgtgctgatgccagactgt
cagaacctggacatgttcacggcctcagagggcggagagtccagcagctgggaaatcttt
cagcgttaccgatgtctggaaaacagccagagcgtggtgaaaactccaatgaccgacatt
tgcagaaacttcatctttaggatttcagctgtgctgcaccagggagccaaagaatgccag
tgtgaccctcagggctcactgagcacagtgtgtgatcccaatggtggtcagtgccgatgt
cgccccaacgtggttggccggagctgtgaccgatgcgctcctgcgaccttccagttcgga
cccagtggctgcatagcatgtgagtgcgacccgctgggctctcagagtctgttctgtgat
cagctgaccggccagtgcgtctgtgtggtcggtgcgtacggccggcagtgcgaccgctgc
ctgccgggtcactggggcttccccgcttgccgaccctgctcctgcaacggtcacaccgag
acctgcgaccccgacacgggcagctgcctgcactgcagagaccacactgcaggacacagc
tgtgagaggtgtctagatggttactatggtgacccagtgctggggtcaggtgaccactgt
cgtccctgcatgtgtcctgatggtccagagagtttgcgtcagtttgctggaagctgtttc
cgtagcgacgactcccagcaggccgtatgcgtttgcagcactggatacagaggatctcgc
tgtgatgagtgtgctccaggttaccatggaaacccaaatgaagtgggggggcagtgtgtt
ccctgccagtgcaacaacaacatcgacatgctggaccccgagtcctgcgaccgtcagacc
ggcgagtgtctgcgatgtctgtaccacagcgagggcacggcatgccaggactgtaagctg
ggttactatggcaacgcattgctgcaagactgccggaaatgtgtgtgcaatcatctgggc
agcagcccgtccagctgctctccgtctggggactgtcactgcaaccgcagcagcggtcag
tgtccctgtctgcccaacgtcactggccagtactgcgaccgctgtgcgccggacacctgg
aacatggcaagcggcctcgggtgtcagagctgtgactgcgaccccaaacattcgtacggg
acgtcctgcaaccagatcagtggtcagtgttcttgccaacctggttttggaggaagaacc
tgcaacgagtgtaaggagctgttctggggggaccctgaagtcaaatgttacgcctgcgac
tgcgacccccgcggcatctcggagcagcagtgcaacaaagccaccggccgctgcgtgtgc
gtggagggcgtgtccgggccgcgctgcgacacttgcgctcgcggcttctctggagttttc
cccgactgtcagcgctgccaccagtgcttcgcggagtgggatgatgtcatcggccagctg
accaaccagacgcaccggctggtcaacaaggtcaacgctcttaaagccagtggcgtgagt
ggaccgcacaagaagcactttgacagcatgcagaaaagtgctgcggagatccaggtcatc
ctggaccagaacctcgcctcacagccgctgacggagatccagcagctgctgcagcaggcc
agtgacctgatggggacgctgagtcagactttgaaccgcaccgagcagactctggtggac
ctggaggaccagaactctgtgaccaagacagaagtggactctctgatgtcagacactcag
aaactggatgaaacagtccaggagctgcagctgcaggtccagttcatcaagaactccaac
atccgaggagcgtccgacagcatcacaaagtacttcctgcagtctcaggcagcagaagct
cgagctaacgcctccaccgtggactctggcagcccaacagaactttctgccgagctgcgc
cagctcactctggacactctgaatcagacgcaggagaacttcaccagcagacacactgag
catgcccagaacctggacgagctggcgggagagctgcagacgttggacctgtcatggctt
aaccagaagacgtgtggaggttcctcgtccgctcaggactcgtgccgctctccttgtggg
ggtctgggctgtgaggggaagagtggatgtggaggagaagggtgtgacggcgccgtgacc
gccgctaacaccgttctgatgaaggcccaagagtccgagcaggacatcgccaacgccctg
gaggaggtggaccagctctccaagatggtgttggaagccaagctccaggcagacgaggcc
aaactgaacgcccagaacgtgctaaagaacgccaacagaaccaaactcaaagtggaccag
agcaacgaagagctgcgcagcctcatccgacaaatccgagacttcctcacgcaggacgct
gctgacccggacagcattgaacacgtggccaatgaggttctggccctgcagatgccaacc
acaccggctcagctccagaacctcaccgatgagatccgactgaaggtgggggaactggga
aatgtggagtccatcctggagcagagcaccgagaacatccagagagctgaggccctgctg
gagcaggcacggcgagccagggaagaggcgtctggtgtcaaggactctgcggataaagtg
aagcaagtcctggaagaggttcagaaagctcagacgtcggttggcagcgccatccagcag
gctaccgccgaaatccagaacaccaaagagctgctgtcttccgtggagctagaaacagcg
agcgcagagctgaaagtcaacaacgccacggtgaggctacagaaactggatgaagatgtg
atgctgctgcggagcaggaacctgaacgtcagcgtgagcaccaacaggaccggtcaggaa
gctgcagtcatccagaacatggcggacgaggtcaagcaggagctgcagtcggaggtgaag
cagaaggtcagcactgtggaacagctgattgatcagaaggcagtgggagtggctcaggca
aaggacagggcggagtctctgcagaaggaggccaaagagctgctgctgcaggctgctgac
aagctgcagattttaaaagaccttgaagcgtcttatgaagataaccagcacgttttggag
gtgaaagctgagcagctggtggagctggaagctgcagtgaaggagctgctgcaggacatc
agccacaaagtcagcctgtacagcacctgcctgttctag
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integrated database retrieval system