Oryzias melastigma (Indian medaka): 112141166
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Entry
112141166 CDS
T07439
Name
(RefSeq) transcription initiation factor TFIID subunit 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112141166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oml03021
]
112141166
03036 Chromosome and associated proteins [BR:
oml03036
]
112141166
Transcription machinery [BR:
oml03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
112141166
Coactivators
SAGA/TFTC/STAGA complex
112141166
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
112141166
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
TAF
Motif
Other DBs
NCBI-GeneID:
112141166
NCBI-ProteinID:
XP_024120018
Ensembl:
ENSOMEG00000000870
LinkDB
All DBs
Position
LG6:complement(7770252..7787205)
Genome browser
AA seq
897 aa
AA seq
DB search
MAGARDPLEDMLLTEVDEAAVSDLLGDLESRLGDASAVSFSARKRDAAAAQLSGKARDQA
GAVEPQQGRPSAGSSRAPGTGEPPPSSSSAPAVGAGLQAERPTSPAVPSGPGPVTADGFH
RAAAPGSVPADEAARSSPSGVQTSAGSVKLPNSTAVSEPASPGTVTPTSQVPQTTACPPL
TSPQRNHIPATSMGHNGVDPKGAPTASGAASQVVNHSVPLMPPKMPPPAAAVHPEVGQPP
RVQPAVNGLVQPATSPVRTPLPGAPAAIQPQKAALVAGVTRAAAPQLTVRPQQQQQATIQ
LPPGFTIPPGMVLVRTETGQLILVPQQVLAQAQVKPHQGQTTVAQRPMTPTATPPIRVST
ATTVAAPAQTIRLASPVQPRMAQSPSTTAVQALTVAPGSSVVSVKMSTPQKTQAGMAAGG
VPPVEPPVTAGAPPATAPSARVTVISQEMQENVKKCKNFLATLIKLASHNSPSPETAKNV
KSLVQDLLDAKIEPEEFTSRLQADLKSSPQPYLIPFLKKSLPALRQTLLNSQQFLTPVPP
VTSTPTPAAPGAIAATAIRPRLPTAATGGAVRLNPPIANTTTLATVRPGAQMLQTRSPVV
IGHQLRHPVTLLRGPLCTTGKGPVSLAASANQKKQCDPGGGTFRDDDDINDVASMAGVNL
NEENARILATSSEIVGTKIRSCKDESFLPADVLHRRILDTARKLGVTEVPVDVVNVVSHA
TQFRLRSLLEKVSVVAQHRADAVRDEELYEQTSDVRAQLRFFEQLERLEKQRKDEQEREI
LLKAAKSRARQEDPEQARLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKKRKLDSVGG
AVSGSEVSSGSGLLGSPSPRQQLRQRITRVNLRDFILCLEQDRSTARSMALYKALLK
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagcccgcgacccgctggaggacatgctcctgacggaggtggacgaggcggcc
gtcagcgacctgctaggggacctggagtcccggctgggtgacgcctccgcagtctccttc
tctgccaggaagcgggacgcggccgccgcacaactctcaggaaaagcgcgggatcaagcg
ggagccgtggagccgcaacaagggcgtccaagcgcgggctcgagccgggcaccgggcacc
ggtgagccgccaccttcctcctcttccgctcctgcggtgggagcgggcctgcaggcggaa
cgaccgacttctcccgctgttccgtccggacccggacctgtaaccgccgatggcttccac
cgagccgcggctcccggctctgtcccggcggatgaggcggcacgctcatccccctccggg
gtgcagacttcagcgggttccgtgaagttaccgaactctaccgcagtctcggaacctgcg
agtcccggtaccgtcaccccgacttcgcaggtacctcagaccacggcgtgccccccctta
acgagcccacagcgtaaccacatcccggcgaccagcatgggccacaacggagtggacccg
aagggcgcccccaccgcgtccggcgctgcctctcaggtcgtgaaccacagcgttcctctg
atgcctcctaagatgccccctcccgcagctgcagtccaccctgaagttggccagcccccc
agagtccagcctgctgtgaacgggctggtgcagcccgccacgtcccccgtgaggactcct
cttcccggggcccccgccgccatccagccgcagaaagctgcactagtggctggtgtgacc
cgggctgcggccccccagctgaccgttcggccccagcagcagcagcaggccaccatccag
ctgccccctggcttcaccatccctccaggaatggttttggtccgaactgaaaccggtcag
ctgatcttggtcccacagcaggttctggctcaggcacaagtcaagccacatcagggtcag
acgacggttgctcagagaccgatgactcccacggcaactcctcctatccgggtcagcacc
gccaccacagtggcagcacccgcccagaccatccgcctggcctccccagttcagcccagg
atggctcagtctccgtctaccaccgctgttcaggccctcacggtggcgccgggcagttct
gtggtgtctgtgaagatgagcacgcctcagaagacccaggctggaatggcagcaggaggg
gtccctccagtcgagccccctgtgaccgcaggtgccccccctgccactgcacccagcgcc
agagtcactgttatctcgcaggagatgcaggagaatgtcaagaagtgcaagaacttcctt
gcgacactcatcaagctggcatcccataattccccctcccctgagaccgccaagaatgtg
aaatccctggtccaggacctgcttgacgcaaagattgagcccgaagagtttacatcccgg
ctgcaggccgatctgaagtcctcccctcagccctacctcatccccttcctcaagaaaagc
cttcccgccctgaggcagacgctgctcaacagtcagcagttcctgaccccagttccacct
gttacctccacccctacacctgctgctccaggagccatagctgcaactgccatccggcca
cggctgcccactgctgccacagggggcgctgtccgcctgaacccgcccatagcaaacacc
acaactctggcaacagttcgcccaggagctcagatgctgcagactcgatcacctgtggtc
atcggtcatcagctcagacatccagtgacgctcctgcgaggacctctgtgcacgaccggc
aaaggccccgtcagcctggcagcttcagccaatcagaaaaagcagtgtgatcctgggggt
gggaccttcagagatgacgacgacatcaatgacgtggcatcgatggccggggtcaacctg
aacgaggagaacgctcgtatcctagcaaccagctccgagattgtgggcacaaagatccgg
tcttgtaaagacgagtctttcctgcccgctgacgtgctgcaccgccgcatcctggacaca
gccaggaagctgggtgtgaccgaggtgccggtggacgtggtgaatgtcgtctcccacgcc
acccagttccggctgcgctcgctgctggagaaggtttctgtggtggcccagcaccgcgcc
gacgccgtgagggacgaggagctgtacgaacagacgtctgacgtgcgcgctcagctgcgt
ttcttcgagcagctggagcgactagagaagcagcggaaagacgagcaggagcgcgagatt
ctgctgaaggcggccaagagccgagcccgtcaagaggatccggagcaggcgcggctcaag
cagaaggccaaagagatgcagcagcaggagctggctcagatgagacagagagacgcaaac
ctcacagctctcgccgccataggaccacgcaagaaacgcaagctggacagcgtgggcgga
gctgtttctggtagtgaggtttcctcaggttcggggttgttgggaagcccctccccccgc
cagcagcttcgccagcggatcactcgggtaaacctcagggatttcatcctgtgtctggag
caggaccgcagcacggcgcgctccatggcgctctacaaggctctactgaagtga
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