Oryzias melastigma (Indian medaka): 112141227
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Entry
112141227 CDS
T07439
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oml03041
]
112141227
Enzymes [BR:
oml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112141227
Spliceosome [BR:
oml03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
112141227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
Helicase_C
R3H
OB_NTP_bind
DEAD
Ank_2
HA2_N
Ank_4
AAA_19
nSTAND3
Ank_5
Ank
AAA_22
ATPase
AAA_7
T2SSE
PhoH
Motif
Other DBs
NCBI-GeneID:
112141227
NCBI-ProteinID:
XP_024120084
Ensembl:
ENSOMEG00000014221
LinkDB
All DBs
Position
LG12:complement(25534234..25589481)
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AA seq
1364 aa
AA seq
DB search
MSAKSHSSVLQGEGSRSSVEIYIDEEIKNAINISLRRFYCSEEKEIEFPPSLSPAERAYV
HQLAQTLGYISRSKGKEPNRLLIVKKRDVFKKVQPKLPLTVSQNSKDIIHSLLQRLTSSR
KDHMDKLPSSRRGITAIEPDSYYDRNRASGRLNKGIPMVPKKRSSSELDDFRSALPICEN
REEILQLIQQNQVVLVLGETGSGKTTQIPQFLLDDCNNSAQPCRIFCSQPRRSAAIAVAE
RVAAERGERVGQTIGYHIRLESRVSPKTLLTYCTSGVLLRTLMAGDASLSTVTHVIVDEV
HERDGLTDFLLTKMRDVLKKIPSLKLVLSSASLDVDLFSRYFGGCPVLCLKETQFEVKEL
FLEDVLKLISFKEKTETKCLSECCAAVEQSSLGDEQKDILSPNARPASGCGDDDKSSISQ
TGEKSSIHTETRLQREIDSCISSIFFNEDQEIFCQLFNLILNEGVNVDCSHSETGATPLM
MSAGRGFVTQMQQLLSLGADSNKRDSNGWTALDFAKHFHHTEAIDLLQCCKSPEIESTLE
ESILVQSNYVETNDDDKDLLRLYHHSFDDESLDLELIMTLLHNICSTSSDGAVLIFLPGY
DEIVALRERILNEDTFCTHPESYQVLILHSDMHTLDQRTAMKPSPPGIRKIILSTNIAET
SITINDVVFVIDSGKVKEKYFDALSHTSLLKISWISKASVLQRKGRAGRCRPGYCFHLFS
RFQFRNMLEFPVPQLLRMPLQELCLQTKLLAPSSCLIGDFLSKAPQPPLAHAVNSTVQIL
KKIDALEENEDLTDLGYHLADLPVEPQLGKMVLCAVVLKCLDPILTIACALAYRDPFILP
TESSQKRSALNCRKRFASNSFSDHMALLRAFQAWQKARSDGWERTFCEKNFLSQATMDMI
LGMRTQLLGHLRAIGFVRARGGSDIRDVNLNSENWAVVKAALVMGLYPNLIQVNTKGSLL
SSLEEKKVHFHPTCVLSQQVNEENTSAENELALPTDWLIYDEMSRGHRVARVRCCSLVTS
ITVAIFGGHARLPCSTLEDDAAHQTNVSGNDSDIEDLVEMKIDEWLVFLMEKETAGSVFE
LRKKWQQLFGKRICCPSKPWSQQDEDFLCTLVSVLGVEEQKAGLQQPTGIGQRPKPMSSE
EVPKMSVITPKNSSGGTISISRPCPLTHSDLKMKAKHREDVQSSSGSLCSVNMDTSSISW
TLSSEKPVPVLPVFSSVRYFIMKSSNMRNLEISQQKDIWSTSPTNESKLTKAFNCNSFVI
LIFSVQGSGHFQGYARMTSAVHLENGQDWGFVGLGGVFSVEWIHKENLSFQYTQHILNPW
NDNKKVQISRDGQELEPQAGHQLLMLWDRVFEEGCLTSIVQALV
NT seq
4095 nt
NT seq
+upstream
nt +downstream
nt
atgtcagccaaaagccacagctccgtgctacagggcgaaggttccagatcctccgttgag
atttacatcgatgaagaaatcaagaatgcaataaacatttctttgaggaggttttactgc
agtgaagaaaaagagattgaatttcctccctccttgtctccagctgagagagcctatgtt
catcagttggcacagactttgggatacatttctaggagcaaagggaaggaaccaaatcgt
ctactcattgtaaagaagagggatgtttttaagaaggttcagcctaaacttcccctcaca
gtctcccagaattccaaggatattatccacagtctgcttcaaaggttaacgtcttccaga
aaagaccacatggacaaactgcccagcagcagaaggggcataacggccatagaacctgac
agctactatgacagaaacagagccagtggacgcctaaataaaggtattccgatggtacca
aaaaagagaagttcctcagaactggacgattttcgatcagccttgcctatctgtgaaaac
cgggaggagattttacaacttattcagcagaaccaggtggtgcttgttttgggagaaact
ggctcaggaaaaactacacagataccacaatttctgttggatgactgcaacaatagtgca
caaccctgtaggattttctgcagtcagcccaggcggtcagcggccattgctgtcgctgag
agagtggcagctgagagaggagagcgtgttggccagaccattggttaccatatcagactg
gagagcagggtctcccccaaaaccctgttgacctattgcacaagtggagttctcctcaga
acattaatggccggagatgccagcctttcaacagtcactcatgttattgtggatgaggtg
catgaacgtgacggtctgacggacttcctgctcacaaaaatgagagatgtgctcaagaag
atcccttccctgaaactggttctatctagtgcatcattggatgtagaccttttcagtcgg
tactttgggggctgtcctgttctctgtctcaaagaaacacagtttgaagtgaaggaactc
tttttggaggacgttctgaagctgattagttttaaagaaaagacagaaacaaaatgtttg
tccgagtgctgtgctgcagtggagcaaagttctcttggagatgagcagaaggatatttta
tctccaaacgcccgtcctgccagtggatgtggagatgatgacaagagttccatcagccag
acgggtgagaagagctctattcatactgagacacggctgcaaagagagatagactcctgc
atctccagcattttttttaatgaagaccaagagattttctgtcagcttttcaacctgatc
ctgaatgaaggtgttaatgttgactgctcacacagtgagactggtgcgacacctctgatg
atgtcagccggccgaggattcgtcacacagatgcagcagctgcttagccttggtgctgac
tccaacaaaagggactccaatggatggacggctttggactttgccaaacatttccatcat
acagaagctatagatctgctccagtgttgcaagtctccagaaatagaaagcacattggaa
gaatccattctggttcagagcaattatgtggaaacaaacgatgatgacaaggatctactt
agactgtaccaccacagctttgatgacgagtcgttggacctggagctcatcatgactctg
cttcacaatatctgctctaccagcagtgatggtgctgttctgattttccttcccgggtat
gatgaaatagtggcactgagggaacgcattcttaatgaagatacattctgcacacaccca
gagagctaccaggtattgatcttacattcagacatgcacaccctggatcagagaacggcc
atgaagccctctccacctggcatccgaaaaatcattctctccactaacattgctgaaaca
agcatcaccatcaacgatgtagtctttgtcatcgactctgggaaagtcaaagagaagtat
tttgatgcactcagtcatacatctctgttaaagatatcatggatctctaaagccagtgtt
ctgcaaaggaaaggaagagctggacgctgccgcccaggttattgcttccaccttttcagt
cgattccaattcagaaacatgctggagtttccggttcctcagctgctgcgaatgcctcta
caggagctatgcttgcagaccaaacttctggctccctcttcctgtctcattggagacttc
ctgtccaaagccccacagcctcctcttgctcatgctgtaaacagtactgtgcagattctg
aagaaaatagatgctcttgaagagaatgaggacctgactgaccttggctaccacctggct
gatttacctgtggagcctcaactgggaaagatggtgctgtgtgctgtagtgctcaagtgt
ctcgaccccatcctcaccattgcctgtgctttggcctatcgtgacccgttcatccttccc
actgagagctctcagaagagatccgctctcaattgtcgcaaacgctttgcttctaattcc
ttcagcgaccacatggccttgctaagagcgttccaggcatggcagaaggctcgcagtgat
gggtgggagagaactttttgcgagaagaactttctatctcaagctaccatggacatgatt
ctaggcatgaggacgcagctgcttggacatcttcgtgcgattggtttcgtgcgagcccgt
ggaggaagtgacatccgtgacgtaaatcttaactcagaaaactgggcggtggttaaggct
gctctggtgatgggcctttatccaaacctcatccaagtcaacacgaagggctctctgctt
tccagccttgaagaaaaaaaagttcactttcatcccacatgtgtcctaagtcagcaagtc
aatgaggagaatacatcagctgaaaatgaactggcccttccaacagactggttgatctat
gatgagatgagccggggtcacagggtggctcgtgtccgttgctgctccttagtgacttca
atcacagttgccatttttggaggacatgccagactgccatgctccacgttagaagacgat
gctgcacaccaaacaaatgtgagtggaaatgacagtgacatagaagacctggttgagatg
aagattgatgagtggcttgtcttcctgatggaaaaagagactgcaggatcagtgtttgaa
ttaagaaaaaagtggcaacaattatttggaaagaggatttgctgtccttcaaagccttgg
tctcagcaggatgaggattttctttgtaccctagtctctgttctaggagttgaggagcag
aaagcaggcttgcagcaacccacagggattggccagcggccaaagcccatgtcatcagag
gaagtgccgaagatgtctgtgattactcctaagaacagttctggaggaacaatcagcatc
tcaaggccttgtccactgacacactcagatctaaagatgaaggccaagcacagagaagac
gtgcagtcttccagtggttcgttgtgctctgttaacatggacacttcaagcatctcctgg
actctatcttcagaaaagccagtgcccgtgctgcctgtcttttcctccgtccgatacttc
atcatgaagagcagcaacatgaggaaccttgaaatctctcagcagaaggacatctggtct
acctccccaaccaacgagagtaaactcactaaagctttcaactgcaacagctttgtcatc
ctcatcttctctgttcaaggctctggacacttccagggctatgccagaatgacatcagcc
gtccatttggaaaacggtcaggactggggctttgttggacttggaggggttttctctgtt
gagtggatccacaaggagaatctctctttccagtacacgcaacacattctcaacccttgg
aatgacaataaaaaggtccaaatcagcagggatggacaagagttggagccacaggcaggc
catcagctcctgatgctgtgggacagagtctttgaagaaggatgtctgacttccattgtt
caagctctggtctga
DBGET
integrated database retrieval system
