Oryzias melastigma (Indian medaka): 112141479
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Entry
112141479 CDS
T07439
Symbol
cnga1b
Name
(RefSeq) cyclic nucleotide-gated channel rod photoreceptor subunit alpha
KO
K04948
cyclic nucleotide gated channel alpha 1
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
112141479 (cnga1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
oml04040
]
112141479 (cnga1b)
Ion channels [BR:
oml04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
112141479 (cnga1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
CLZ
cNMP_binding
Presenilin
CDC45
PFF1_TM
DUF3043
Sec62
Piezo_TM1-24
Tim54
Neur_chan_memb
NPR3
GmrSD_N
RR_TM4-6
CLN3
ADI
Menin
ALMT
Zip
Motif
Other DBs
NCBI-GeneID:
112141479
NCBI-ProteinID:
XP_024120388
Ensembl:
ENSOMEG00000006587
LinkDB
All DBs
Position
LG18:complement(371024..377315)
Genome browser
AA seq
661 aa
AA seq
DB search
MAKVAPLDPPCVRELTPPIIVLQDMEEDLEDTGEGVRVSRRAGPGALFNVNNSNNNEEDE
EEKKRKKREKKEKKEKKEKEKQEKKERKEKKQKEKEEKEKEKQKAKEKEEKEKKAKEEAA
KEITVIDPAGNTYYHWLFIITIPVMYNWTLIIARACFEELQTDYLVFWFLMDFVSDIIYL
LDMVFRTRTGYLEQGLLVKDEKKLRERYMISFQFKMDLVSMIPTDIFYLILGVTYPEIRL
NKLLRFNRMMEFFQRTETRTNYPNALRISNLVMYILIIIHWNACLYYSFSKAIGFGADRF
VYPDPSNPEFGRLVRKYAYSMYWSTLTLTTIGETPPPVENSEYFFVVTDFLVGVLIFATI
VGNVGSMITNMNAARADFQARIDAIKQYMSFRKVTKDLEKRVIKWFDFLWTNKKAVDERE
VLKYLPDKLRAEIAINVHLDTLKKVRIFADCEAGLLVELVLKLQPQVYSPGDYICKKGDI
GREMYIIKEGKLAVVADDGVTQFVVLSDGSYFGEISILAIKGSKAGNRRTANIRSIGYSD
LFCLSKDDLMEALTEYPDAKALLEEKGKQILMKDGLLDLELAAQGPDPKEIEEKVDRMTS
TLDVLQTRYARLLAENEATHSKIKHRVTRLERKLAPPPRSDQPGDAPPPPTPETAKEEEK
K
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggctaaagtggctccactggaccccccttgcgtcagggagctgacgccccccatcatt
gttctacaggacatggaggaggatctggaggacactggggagggagtgagggtcagcagg
agagccggacctggagctctgttcaacgtcaacaacagcaacaacaacgaggaagacgag
gaggaaaaaaagaggaagaaaagggagaagaaagaaaagaaggagaagaaggagaaggag
aaacaggagaagaaggagaggaaggagaaaaagcagaaggagaaagaggagaaagagaag
gagaagcagaaggccaaagagaaggaggagaaagagaagaaggccaaagaggaggcagcc
aaagaaatcaccgtcattgatccagcgggaaacacctactaccactggctcttcatcatc
accatccccgtcatgtacaactggaccctcatcatagccagggcgtgttttgaagaactt
caaaccgactatctggtcttctggttcctaatggactttgtctctgacatcatttatctg
ctggacatggtgttcagaaccagaaccggttacttggagcagggtctgctcgtgaaggac
gagaagaagctgcgagagcggtacatgatcagcttccagttcaagatggacctggtctcc
atgatcccgaccgacatattctacctgattctgggtgtcacctacccggagatccggctc
aacaagctcctgcgcttcaacaggatgatggagttcttccagcgcacagagaccagaacc
aactacccaaacgctcttcggatctccaacctcgtcatgtacatcctgatcatcatccac
tggaacgcgtgtctctactactccttctctaaggccatcggtttcggggctgacaggttc
gtgtatccggatccttcaaacccggagtttggtcgtctggtcaggaaatacgcctacagc
atgtactggtccacgctgacgctcaccaccatcggagaaaccccgccccctgtggagaac
tcggagtacttctttgtcgtgactgacttcctggtgggtgtgctgatttttgctaccatc
gtcggtaacgtcggctcgatgatcaccaacatgaacgcggccagagctgacttccaggct
cgcatcgacgccatcaaacaatacatgagcttcaggaaggtgacaaaggacttggagaaa
cgagtgatcaagtggttcgacttcctgtggaccaacaagaaagcggtggatgagcgagaa
gttctgaagtacctgcccgacaagctgagagcggagatcgccatcaacgttcacctggac
accctgaagaaggtccggatctttgcggactgtgaggccggtctgctggtggagctggtg
ctgaagctgcagccgcaggtctacagtccaggagactacatctgcaaaaaaggagacatc
ggcagggagatgtacatcatcaaggaggggaagctggcggtcgtggcggacgacggcgtc
acgcagttcgtagttctcagtgatggaagctacttcggtgagatcagcatcctggccatc
aaaggcagtaaggcaggaaacaggaggacagccaacatcagaagtatcggatactccgac
ctcttctgtctttccaaggatgacctgatggaggcgctgacagagtatcccgatgccaaa
gccctattggaggagaaggggaagcagattctgatgaaggacgggctgctggacctggag
ttggcggctcagggtccggatcccaaagagatcgaggagaaggtcgaccgcatgaccagc
acgctggacgtcctgcagacccgatacgcccggctgctggccgagaacgaagccacgcac
agcaagatcaaacaccgagtcacacggctggagaggaagctggctccgcctccacgatcc
gaccaacccggggacgccccgccccctccgacccctgagactgctaaagaggaggagaag
aaatag
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