Oryzias melastigma (Indian medaka): 112141922
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Entry
112141922 CDS
T07439
Symbol
nfrkb
Name
(RefSeq) nuclear factor related to kappa-B-binding protein isoform X1
KO
K11671
nuclear factor related to kappa-B-binding protein
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112141922 (nfrkb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oml03036
]
112141922 (nfrkb)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Chromatin remodeling factors
INO80 complex
112141922 (nfrkb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NFRKB_winged
ASXH
Motif
Other DBs
NCBI-GeneID:
112141922
NCBI-ProteinID:
XP_024120904
Ensembl:
ENSOMEG00000020515
UniProt:
A0A3B3CME7
LinkDB
All DBs
Position
LG14:14386765..14398405
Genome browser
AA seq
1274 aa
AA seq
DB search
MDSLSHMITDRLDPKEENGGVITEECMLGDCRVSLPEDLLEDPDIFFSVLSENTWNEVLS
DSQRQHLRHFLPQFPDNNLEEQNDTIANLFNNRNFLFGNPLHLAQKLFRDGYFNPEVVKY
RQLCAKSQRKRHLHALQQYYHKLLKQILVSRKELLDFAVQNGLDFPPKRRLPNKTQAEMR
ETRVRRRWSRILKEVKTECEDAIASSDDEETAIWTQAPQSPSSPTPTVSLRVLPTLSTQD
MKTSEKVELSELDLKVMLQNHCEKRKRQPDHPDLITSDIQLRDILSRSNIGRKGTMPLFD
LSLPKKKMRDERRRKKLRTIKTETEDPCETLPLSEAPAAPSAHISSSLPEPPCTLQTIIK
EEVVEESQSSPGALEEIAASFFSLLESIFRTEGLASTLMLEEKVQMWQMSPASSLNPWFS
SASCWSDLVLQALQFLAGETKDGMMALPSGFSPFVEFVDESQQWRWIGATQDTEKDLGAL
CQLWLDSKDFVVKTESEDISELMSPIPKLSTDYVVRPSTGDERQVFQVQEQHRYNEPHKA
FTFRMHGFESVVGPVKGVFDKEMSLNKAREHTLLRSDRPPYVTILSLVRDAAARLPNGEG
TRAEICELLKDSQFLAPDVTSAQVNTVVSGALDRLHYEKDPCVKYDIGRKLWIYLHRHRS
QEEFERIHQAQAAAAKARKALQQKPKPASKPKSGSKDGGGKTPGSVEAGQDVSSNPMSPI
STTLTPNTPGTPKSPLPCTATTPTKTGVPDAVKTSPGVLLVSPPSLPQLGTILPTSQACP
PVSQPVPSQHTARIVSHLAASSLPQVRVVSTQPALAPSAASQQATLVHQTPHQIRMPVSV
AAKGISQAVVSVPLRTQSGTSPVQVPTTLSMSAVTVTKPQTGSPGSPANKPTSPAVLQGV
TGSNIKQVSITGQLGMKTPGSAGIPITATNLRIQGKDVLRLPPSSITTDAKGQTVLRITP
DMMATLAKSPVATVKLTSDFLGSATAGSKSISATLHVTPPHLSPSSASSASPCMGEVQTT
KASPVSSTMLKAAGDAAIRLMPTLAVNVADQKSRTFSPDKSATIRIMPGLGVIPQKQGQT
ITMTTSTGSKPLPVPTCATVVTMAASVATATKSITVAPGVSGAPLTLATATAAVRQVPAT
VVSTQAGKLPARITVPLSVLNQPLKTKSVVTAPIVKGSINTNSISSLGRNIILTTMPAGT
KLIAGNKPVSFVTAQQFQQLQQQGQATQVRIQTVPTQQLQQHMATGSPKSLSTVVVTTAP
SHKPAPDPPPAPQN
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atggattcactttctcacatgattactgatcgccttgatccaaaagaggagaatggtggg
gtgatcacagaggaatgcatgcttggagactgcagggtgagccttccagaggatctcctt
gaagatcctgatattttcttctctgtgttgagtgaaaacacgtggaatgaagtgctctcc
gattctcagagacaacacctgcgacactttttgccacagttccctgacaataaccttgaa
gagcagaacgacaccatcgctaacttgttcaacaacagaaattttctctttggaaaccct
ctgcaccttgcacaaaagctgttcagagatggttacttcaatcctgaggtggtgaagtac
agacaattatgtgccaagtctcagaggaagcgtcatctgcacgcccttcagcagtattac
cacaagctgttgaagcaaattctagtctccagaaaggagctgctggattttgctgttcag
aacggtttggactttccaccaaaaagaaggctgccaaacaagactcaagctgaaatgaga
gagacgagagtgagaagacgatggagccgcatacttaaagaggtcaaaacggagtgtgaa
gacgccattgcttcctctgatgatgaagaaacggcgatatggactcaggcgcctcagtcg
ccgtcctctccgactcccaccgtctctctcagagttcttcccaccctctccacccaagac
atgaagacctccgaaaaagtagaactaagcgagctggacttgaaagtcatgttgcaaaac
cattgtgagaaaagaaagcgccagcctgaccaccctgacctgattacctctgatatccag
ctgagagacatcctgtccagatccaatattggtcgaaaagggaccatgcctctcttcgat
ctgtctttgcctaaaaagaagatgagggatgagaggaggaggaaaaagttgagaacgata
aaaacggagactgaagatccctgtgaaacgctccccctttcagaagcccctgcagccccg
tcggcgcacatcagcagctctctgccagaacccccctgcactctgcagaccatcatcaag
gaggaagtcgtggaggaatcccagagcagcccaggagctctggaggaaatagcagccagt
ttcttcagcttgttggaaagcatcttccggaccgagggtcttgctagcactttaatgttg
gaggagaaagttcagatgtggcagatgtctccagccagctccctcaatccctggttttca
tctgcttcctgctggtctgatctagttcttcaagctctacagtttctagcaggagagact
aaagacggcatgatggcgctcccaagtggcttctctccatttgtggagtttgtcgatgaa
tctcagcagtggagatggatcggtgccactcaggatacagagaaggacctcggtgcgctc
tgtcagttgtggctggactctaaagattttgttgtcaaaacagaaagtgaggacatatca
gaactgatgtccccaataccaaaactatctactgattacgtggtgaggccgagcaccggc
gatgagagacaggtgtttcaagttcaggagcagcaccgatacaacgagccgcacaaagcg
ttcaccttcaggatgcacggcttcgaatcggtagtgggtcccgttaaaggggtgttcgat
aaggagatgtctctcaacaaagccagagagcacacactgctgcgctcagaccgcccccca
tacgtcaccattctctctctggtgcgggacgcagcagccaggctgcccaatggagaagga
acaagggcggagatctgcgagctgctgaaggactcccagtttcttgctccagatgtcaca
agtgcacaggtgaacacagtcgtgagtggagcgctggatcgacttcactatgagaaagac
ccctgtgtgaagtacgacattggccgcaaactgtggatttatctgcatcgccatcgcagt
caggaggagtttgagagaatccatcaggctcaagctgcagctgcaaaagcaagaaaagct
ctgcaacagaagcctaaaccagcctcaaagcctaagtctggaagcaaagatggaggtgga
aaaacgccaggaagtgtggaggcgggacaggatgtgagctccaaccccatgtctccgatc
tctacaactctcaccccgaacacacctggtacacccaagtccccgctaccctgcacagcc
accacccccacgaagaccggagtcccggatgcagtcaaaaccagcccgggagttcttctt
gtgtcccccccgtccctgcctcagctcggaaccatcttacccacaagtcaggcttgtcct
ccagtctcccagccagttccgtcccagcacacggctcggatcgtgagccacctggctgcc
agctccctccctcaggtgcgggtcgtttccactcagcctgctctggcgccttcggctgca
agccagcaggccactctggtgcaccagaccccacaccagatccggatgcctgtgtctgtg
gcggccaagggcatctcacaggcggtggtttctgtgcctttacgaactcagtccggtacc
agtccagtgcaggttccaactactttgtccatgtcagctgtaaccgtaaccaaacctcaa
accgggtctcctggcagcccggctaacaaaccaacatctccagcagttctgcagggagtc
accggctccaacatcaaacaggtttccatcaccggacagctggggatgaaaaccccgggc
agcgctggaattccaataaccgctacaaacctgcgcattcagggcaaagacgtcctgcgt
ctgccgccctcctccatcaccacggacgccaaaggacagacagtgcttcgcatcaccccg
gacatgatggccactctcgccaaatccccggtcgccaccgtcaaactcacctccgacttt
ctgggctctgccaccgcgggcagcaagagtatatcagccactctccacgtgacgcctccg
cacctttcaccgtcctctgcctcaagcgcttcgccctgcatgggggaagtgcagaccact
aaagccagccccgtttcctccaccatgctgaaggcggcaggagacgcggccattcgcctg
atgcccacgttagccgtcaacgtggccgaccagaagtctcgaactttctcgccggacaag
agcgccactatccggatcatgccgggcctcggggtcataccacagaagcagggccagacc
atcacgatgaccacctccaccggcagcaaacctctgccggtgcccacctgtgctactgtg
gtcaccatggcagccagcgtggccaccgccacgaagagcatcaccgtggctcctggagta
tccggcgccccgctgacgctggctacagcaactgcagcggtgcggcaggttcctgcaaca
gtcgtctcaacacaagcgggaaagttaccagcacgaatcaccgttcccctctctgtcctc
aaccaaccactgaagacgaagagcgtcgtaacggcaccaatcgtgaaaggaagcattaat
accaacagtatcagtagcttgggcaggaacatcatcctgaccaccatgcctgcaggcacc
aagctcatagccggaaacaaaccggtcagttttgtcacagcgcaacagttccagcagctt
cagcagcaaggacaggccacacaggttcggattcaaaccgtcccgactcagcagctccag
cagcacatggccaccggatcccccaaatctctctccacagtggtggtcacgactgcccct
tcccacaaacccgctcctgatcccccacctgccccccagaactga
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