Oryzias melastigma (Indian medaka): 112141993
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Entry
112141993 CDS
T07439
Symbol
runx1
Name
(RefSeq) runt-related transcription factor 1
KO
K08367
runt-related transcription factor 1
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
112141993 (runx1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112141993 (runx1)
Transcription factors [BR:
oml03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
Runt
112141993 (runx1)
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Gene cluster
GFIT
Motif
Pfam:
Runt
RunxI
Motif
Other DBs
NCBI-GeneID:
112141993
NCBI-ProteinID:
XP_024120984
Ensembl:
ENSOMEG00000011353
UniProt:
A0A3B3BXI6
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Position
LG2:complement(19610606..19631995)
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AA seq
485 aa
AA seq
DB search
MVFLWDSKYDPAPARRYTPPSTSLSSGGKMSEALPLGAQEAARGAALVGKLRMGERMVEV
ITDHPSELVKTDSPNFLCSMLPTHWRCNKTLPIAFKVVALGDIPDGTLVTVMAGNDENYS
AELRNATAAIKSQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYQRAIKITVDGPR
EPRRHRQKLDEVKAGSLAFSERLTELEQLRRSSIRVTPPHHHHHHHHQPSAGSRQSVALG
SANFSSPTHSQIAAESRQMQSSPSWSYEQSYPYLGQITTPSVHTASQLSPGHSSLSDLSS
RLTGPDLAAFGDPRMALERPFTSLTSLPDTRFSDPRVHYPPTAAAFTYNPTHNTVSNGAL
GITMATAMATTPTGRYHTYLPPPYSANTPHQTQNAPFQSTSSPYHLYYSATTGSYQFSMM
AGGGGASDSRTPPRILPPCTNASTGSSLLHPSLPNQNEGVDVQVESSHSSSPSNMAAGEA
VWRPY
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggtgtttctgtgggactccaagtacgacccagcgcctgcccggcggtacacgcctccc
tccacgtccctgtcctcgggggggaagatgtctgaggccctgccgctgggagcccaggag
gccgcccggggggcagcgctggtgggcaaactgcgcatgggtgagcgcatggtggaggtg
atcaccgatcatcccagcgagctggtgaagaccgacagccccaacttcctgtgctccatg
ctgcccacccactggaggtgcaacaagacgctgcccatcgcgttcaaggtggtcgccctt
ggcgacatccccgacggcaccttggtgacggtgatggctggaaacgatgagaactactcg
gccgagcttcgaaacgccacggcggccatcaagagccaagtggctcggttcaatgacctg
cgcttcgtcgggcgcagtgggagaggaaagagcttcactctgaccatcactgtttttacc
aaccctccccaagtggcgacgtaccaaagagccattaaaatcaccgtggacggacccaga
gagcccagacgccaccgtcagaagctggacgaggtcaaagccggctccctggctttttcc
gagaggctgacggagctggagcagctgaggcggagctccatcagggtgacccctccccac
caccaccaccaccaccatcaccaaccctctgccggcagccgccagtctgtcgccctcggc
tcggccaacttctccagccccacacactcgcagattgctgcagagtccagacagatgcag
tcatctccatcttggtcctatgaacaatcatatccctaccttggccagataacaactccc
agtgtccacacagccagtcagctttcgcccggtcattcttcactcagcgacctgtcttca
cggctcacaggtcctgaccttgccgcctttggtgaccctaggatggccttagagcggcct
tttacctctttaacgtcccttcctgacacccgcttctctgacccccgcgtgcactaccct
cccacagccgccgcttttacctacaaccccactcacaacaccgtctccaacggcgccctc
ggcatcaccatggcaacggccatggcgactacaccgacgggtcggtaccatacctacctt
ccgcccccctactcagcaaacacgccgcatcagactcaaaacgcgcccttccagtcgacg
tcctcgccgtaccacctctactattccgccaccaccggctcctaccagttttctatgatg
gcaggggggggaggtgccagcgactcacggacaccgccgaggattctgccgccctgcacc
aatgcctccacaggctcctcccttctgcacccctcactacccaaccagaacgaaggggtg
gatgttcaggtggagtccagccacagcagttctcccagcaacatggctgccggtgaagct
gtctggaggccatactga
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