Oryzias melastigma (Indian medaka): 112142057
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Entry
112142057 CDS
T07439
Symbol
smarca2
Name
(RefSeq) probable global transcription activator SNF2L2
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112142057 (smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oml03021
]
112142057 (smarca2)
03036 Chromosome and associated proteins [BR:
oml03036
]
112142057 (smarca2)
Transcription machinery [BR:
oml03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112142057 (smarca2)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
112142057 (smarca2)
Chromatin remodeling factors
BAF complex
112142057 (smarca2)
PBAF complex
112142057 (smarca2)
GBAF(ncBAF) complex
112142057 (smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
112142057
NCBI-ProteinID:
XP_024121062
Ensembl:
ENSOMEG00000009736
UniProt:
A0A3B3DAX3
LinkDB
All DBs
Position
LG9:complement(94331..127580)
Genome browser
AA seq
1574 aa
AA seq
DB search
MSTPADTPGGMSHPGPSPAAGLSPGPILGPSPGPDRSPSSVHSMMGPSPGPGTPNAHHGM
QGPGQSDYSQDGMYPMHKPLEGVSDKSMTEAMHFGHMKGVGMRSLHSGMGPPQSPMDQHS
QGYLSPHPSPMGVHEHASSPMPGGGGGPTPPHIPPTQSGPMMPMEGGVAGMGQQGRGPSA
FSPVQLQQLRAQILAYKILARGQPLPENLQLAVQGKRSLPTMQQQPPQQQQQQASSGSPY
RPPGMPMAPVGGPQASPCPAPAMQGANQSAAKPWGDGGENPANVQKHLAPVSSGRPSPAP
PQTSAAPSGPAPSSSAAGLPPGQQVSPMLQMQQKQNRITPIQKPQGLDPMGILQEREFRL
QARIAHRIQELESLPGSLPPDLRTKATVELKALRLLNFQRQLRQDVVACMRRDTTLETAL
NSKAYRRSKRQTLREARMTEKLEKQQKLEQEKKRRQKHQEYLNSILQHAKDFKEYHRSVS
GKIQKLTRSVATWHTNTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLL
QQTDEYVANLTALVYEHKAAQAAKEKKRKRKRKKKVDGDGEGTSAFGLDGEPIDESSQMS
ELPVKVIQTETGKVLQGTDAPKSSQLEAWLEMNPGYEVAPRSDSEESGSEFEEEEEDESK
AETEEKKMMDPSGDGVTVTAAKHIIESAKQDVDDEYSVPTDQTSLQSYYGVAHAVTEKVE
KQSTLLINGMLKHYQIQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLN
GPYLIIVPLSTLSNWVYELDKWAPSVVKIAYKGTPALRRGLVPQLRSGKFNVLLTTYEYI
IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWA
LLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKE
VESQLPEKVEYVIKCDMSAIQKVLYRHMQKGILLTDGSEKDKKGKGGAKTLMNTIMQLKK
ICNHPYMFQHIEESFAEHLGYPNGIISGPDLYRASGKFELLDRILPKLQATGHRVLLFCQ
MTTLMTIMEDYFSYRNFLYLRLDGTTKSEDRAALLKKFNEEGSQFFIFLLSTRAGGLGLN
LQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCSVNSVEEKILAAAKYKLNV
DQKVIQAGMFDQKSSSHERRAFLQAILEHEEQNEEEDEVPDDETLNQMIARNEDEFELFM
RMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTYEEEEEKMFGRGSRCRRDV
DYSDALTEKQWLRAIEDGNLEEMEEEIRLKKRKRKRRQDKDSSSREEGGGKARKRRGRPP
AEKLSPNPPKLTKQMNAIIDTVINYRDGSGRQLSEVFVQLPSRKELPEYYELIRKPVDFK
KIKERVRSHKYRSVGDLEKDVMLLCQNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKDD
DSEEDSEEDDDDDYESEAEAKSVRVKIKLSRDGRGDKGKKRQSRAKAKPVVSDDDSDDDL
DDNDQSDKTQSEDE
NT seq
4725 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgccggcggacactccaggtggcatgtcccatcctggcccctcccctgcagcg
gggctgtcccctggccccatcctgggccccagtccgggcccggatcgctcgcccagttct
gttcacagcatgatggggcccagtccagggcccggaacgcccaacgctcatcacgggatg
cagggcccgggacagagtgactactctcaggacggcatgtatcctatgcacaagcctctg
gagggcgtcagcgacaagtcgatgactgaagccatgcattttggtcacatgaagggcgtg
gggatgaggtcgctccacagcgggatgggtcctcctcagagccccatggaccagcacagc
caaggttacctttctccacatccttcccctatgggagtccacgagcacgcttccagcccc
atgcccggagggggaggcggacccacgccgccccacatcccccccacccagtctggtccc
atgatgccgatggaagggggtgtggccggcatgggccagcagggccgcgggccctcggcc
ttcagcccggtccagctgcagcagctcagagctcagattctggcctacaagattctggcc
cgcggacagccgctccccgaaaacctccagctggccgttcagggcaaaaggagcctaccc
acaatgcaacagcagcctccgcagcagcagcagcagcaggcgtcgagcgggagtccctac
agacctccaggtatgcccatggcaccggtaggcggcccccaggcgagcccctgcccagca
cctgccatgcagggagccaatcagagtgcagccaagccttggggtgacggcggggagaac
ccggccaacgtgcagaaacacctcgcccccgtctccagcggccgtccctcccccgcgccg
ccgcagacctccgccgcaccttcagggccggcgcccagcagctcggcagccggactcccg
ccgggccagcaggtgtctcccatgctgcagatgcagcagaagcagaaccgcatcacgccc
atccagaagccccagggtctggaccctatggggatcctgcaggagagagagttcagactg
caggctcggatcgctcatcgaatccaggaactggagagtctcccgggctctcttcctccg
gacctgaggaccaaagccacggtggagctcaaagcacttcgtctgctcaactttcagcgg
cagctgaggcaggacgtggtggcgtgcatgaggcgggataccacccttgagacggccctg
aactccaaggcttaccggcggagcaagcggcaaactctgagggaagcgcgcatgacggag
aagctggagaagcagcagaagctggagcaggagaagaagcgccggcagaagcatcaggag
tacctcaacagtatcctgcagcacgccaaggacttcaaagagtatcaccgctccgtgtcc
ggcaaaatccagaaactcaccagatccgttgccacgtggcacaccaacacggagcgggag
cagaagaaggagacggagaggatcgagaaggagaggatgaggaggctgatggctgaagat
gaggagggttacaggaaactgatcgaccagaagaaagacaagcgtctggcctacctgctg
cagcagacggatgaatacgtggccaacctcacggctctggtctacgagcataaagctgcc
caggctgccaaggagaagaagaggaagaggaagaggaagaagaaggtggatggagacggt
gaaggcaccagcgcctttggactggacggagagcccatcgatgagagcagccagatgagt
gagcttcctgtcaaggtgattcagacggagaccgggaaggtcctgcagggcaccgacgcc
cccaaatccagccagctggaggcctggctggagatgaaccccgggtatgaagtcgctccg
cggtcagacagcgaggagagcggctccgagtttgaggaggaggaagaagatgagtcaaaa
gcagaaacggaggagaagaagatgatggatcccagcggagacggagtgaccgtgacggcc
gccaaacacatcatcgagtcggccaagcaggacgtggacgatgaatacagcgtccccacg
gaccagaccagcctgcagtcgtactacggcgtggcccacgccgtcaccgagaaggtggag
aagcagtccacgctgctgatcaacggcatgctcaagcactaccagatccagggtctggag
tggatggtttctctctacaacaacaacctgaacgggatcctggctgatgagatgggcctg
ggcaaaaccatccagaccatcgcgctcatcacctacctgatggagcacaagaggctcaac
gggccgtacctcatcatcgtccctctctcgactttgtcaaactgggtctatgagctggac
aaatgggctccttctgtggtcaaaatcgcctacaagggaactcctgctctacgccggggg
ctcgttcctcagctccgcagcgggaagttcaacgtgctgctgaccacctacgaatacatc
atcaaggacaagcacatcctggccaagatccgttggaagtacatgatcgtggatgaaggt
caccgcatgaagaaccatcactgtaagctgacgcaggtgctgaacacccactacgtggcc
ccccgccgcctcctcctcaccggcacgccgctgcagaacaagctgcccgagctgtgggcg
ctgctcaacttcctgctgcccaccatcttcaagagctgcagcaccttcgagcagtggttc
aacgccccgttcgccatgaccggagagagggtggacctgaacgaggaggagaccatcctg
atcatccgccgcctgcataaggtgctccgccccttcctcctccgcagactgaagaaggag
gtggagtcccagcttccagagaaggtggagtacgtcatcaaatgtgacatgtcagccatc
cagaaggttctgtaccgccacatgcagaagggcatcctgctgaccgacggctccgagaag
gacaagaaggggaaaggaggcgccaagaccctgatgaacaccatcatgcagctgaagaag
atctgcaaccatccctacatgttccagcacatcgaggagtcgtttgcagagcatctggga
tatccaaacgggatcatcagtgggcccgatctgtatcgagcttcagggaagtttgagctc
ctggaccggatcctcccgaagctgcaggccacgggccaccgcgtcctgctgttctgccag
atgaccacgctcatgaccatcatggaggactacttcagctaccgtaacttcctgtatctg
cggctggacggaacaaccaagtcagaggaccgagccgcgctgctgaagaagttcaacgag
gaaggctctcagttcttcatcttcctcctcagcaccagagccggcggcctcggcctcaac
ctgcaggccgccgacaccgtcgtcatctttgacagcgactggaacccgcaccaggacctc
caggctcaggaccgcgctcaccgcatcggccagcagaacgaggtgcgcgtcctccgcctc
tgctccgtcaacagcgtggaggagaagatcctggcggccgccaaatacaaactcaacgtg
gaccagaaagtcatccaggccggcatgtttgaccagaagtcgtccagccacgagcgccgc
gccttcctgcaggccatcctggagcacgaggagcagaacgaggaggaagacgaggtcccc
gatgatgaaaccctcaaccagatgatcgcccgcaatgaagacgagttcgagctcttcatg
cgcatggacatggaccgaaggcgggaggacgccaggaaccccaagcggaagccccgcctc
atggaggaggacgagctgccgtcctggatcatcaaagacgacgcggaggtggagaggctg
acctacgaggaggaggaggagaagatgttcgggagggggtcccgctgccgccgggacgtg
gactacagcgacgcgctgacggagaagcagtggctgagggccatcgaggacggaaacctg
gaggagatggaggaggagatccggctgaaaaagcgcaaacgcaaacggcgccaggacaag
gactcgtccagccgggaggagggcggcggcaaggccaggaagaggcggggccggccgccg
gcggagaagctctcccccaacccccccaagctcaccaagcagatgaacgccatcatcgac
accgtcatcaactacagagacggatccggacggcagctcagcgaggtcttcgtccagctt
ccgtcccggaaggagctcccggaatactacgagctgatcaggaaacctgtggacttcaag
aagatcaaggaacgtgtgaggagccataagtaccggagcgtgggcgacctggagaaggac
gtgatgctgctctgtcagaacgctcagaccttcaacctggagggatctcagatctacgag
gactccatcgttctgcagtcagtgttcaagagcgccagacagaagatcgccaaagacgac
gacagcgaggaggacagcgaggaagacgatgatgacgactacgagtcggaggctgaggcc
aagtctgtccgcgtgaagatcaagctgagcagggacggccgcggcgacaaaggcaagaag
aggcagagccgagcgaaggccaagccggtggtcagcgacgacgacagcgacgacgacctg
gacgataacgatcagtcggacaaaacccaaagtgaggacgagtga
DBGET
integrated database retrieval system
