Oryzias melastigma (Indian medaka): 112142209
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Entry
112142209 CDS
T07439
Symbol
vps16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog isoform X1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04140
Autophagy - animal
oml04148
Efferocytosis
oml05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112142209 (vps16)
04148 Efferocytosis
112142209 (vps16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
112142209 (vps16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oml04131
]
112142209 (vps16)
Membrane trafficking [BR:
oml04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
112142209 (vps16)
Hops complex
112142209 (vps16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
NMD3_OB
Motif
Other DBs
NCBI-GeneID:
112142209
NCBI-ProteinID:
XP_024121224
Ensembl:
ENSOMEG00000007502
LinkDB
All DBs
Position
Unknown
AA seq
832 aa
AA seq
DB search
MAFVTASWNPLGEAFYRKLELYEMSWSIRDGLRDSLVAAAPYGGPIALLREPLRHSPSSR
PQLEIYSASGIAITSFPWKSGPVVHLGWSVSDELLCVQEDGSVLIYDLFGSFKRHFSMGQ
EVVQSQVLEAKVFHSPYGTGIAIVTGSSRFTLATNIEDLKLRRLPEVPGLQGKPASWVVL
TQDRQTKVLLSIGPELYILDNTSCTAVCPPGLSPHAGSIVHMSVSFSYKYLSLFTDSGHL
WAGLSNLQEKLIEFDTKKTDRPKQMLWCRRPKSQQPSVVLMWERLLLVVGECNDTIQFPV
VDVSFLVGELDGVRIINSTNQELLQEVPLVCQDIFKIASMAPGALLLEAHREYEKSSQKA
DEYLREIKEQNVLEKAVQQCVEAAAHEYDPATQKSLMRAASFGKCFLTDFCSDHFVSTCR
ELRVLNAVRESSVGMPLTHTQFKQMTLQVLIDRLLFRQFYPLAIEICRYLKIPDYQGVNR
VLKHWASCKVQQKELSDDAIARAVCVKVGESPGVSYSHIAAKAYECGRTELAIKLLDFEP
RSGEQVPLLLKMKRSHLALNKAVESGDTDLVYMVVTHLKNEMNRGDFFMTLRNQPVALSL
YRQFCKLQEQETLKDLYNQDDNHQELANYYVTVSYREKRLESRLSQLQNAVDEYNKAKND
FAAKATEEEMRLLRFQRKLDDEKGAGLLGLSLQVTMETLLSLGLHKQAEQLYRDFKVPDK
RYWWLKLKSLAEKEEWEELEKFSKSKKSPIGYLAFVETCIKYNNRYEAKKYISKVTPEQK
VKAHLAVGDLEGAAEAAIEHKSESEIALVLSRCSTSNRLLIDRLNQASGAKK
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttgtcacggccagctggaacccactcggggaggccttttaccggaagttggag
ctctatgagatgtcttggagtattcgagatgggcttcgggacagtctggtggctgcggca
ccgtatggcggacccatagctcttctcagagaacctcttaggcattctccaagttctcga
cctcagctggagatctactcggcatcgggcatagccatcactagctttccttggaagagt
ggacctgttgtccatctgggctggtccgtaagcgatgagctgctgtgtgttcaggaggac
ggctcagttctgatctatgatctgtttggatctttcaaaagacacttcagcatgggacag
gaagttgtccagagtcaggttttggaggccaaggtgttccactctccctatgggacaggt
attgctatagtaacagggtcctcccgcttcaccttggccacaaacatcgaggatctgaaa
ctgcgcaggttacctgaggtaccaggtctccagggaaaaccggcctcttgggtcgtcctc
actcaagacagacagaccaaagttttgctgtccatcggaccagaactttacatccttgat
aacacgtcctgcactgctgtgtgtcccccaggcctgagtccccatgcaggcagcattgtc
cacatgagtgtctctttcagctacaagtacttgtccctcttcacagactctggacacctg
tgggcagggctttctaacctacaggaaaaacttatagaatttgacaccaagaagacagac
agacccaaacagatgctgtggtgtcgcaggccgaagagtcagcagccatctgtggtgttg
atgtgggagagactgctcctagtggttggagagtgtaatgacaccatccaattccctgtt
gtggatgtgtcttttttggtgggtgaattggacggagttcggatcatcaactccaccaac
caggaactactgcaggaggtcccgctagtctgtcaggatatcttcaagattgcctccatg
gctcctggagctctgttgctggaggcccaccgggagtatgagaaatccagccagaaagct
gacgagtacctgagggagatcaaggagcagaacgtgctggagaaggcggtgcaacaatgt
gtggaggcggcggctcacgagtacgaccccgctacccagaagtccctgatgagggcggct
tcctttgggaagtgtttcctgacagacttctgctcggatcactttgtgtccacctgcaga
gagctgcgagtactgaacgccgttcgcgagagcagcgtgggaatgccactcacacacacc
caattcaagcagatgacattgcaggtgctgattgataggttgttgttccggcagttttac
ccgttagccattgagatctgtcgttacctgaagattcctgactatcagggcgttaacaga
gtcctgaagcactgggcctcctgtaaggtgcagcagaaagaattgtcagatgacgccata
gcacgagcagtgtgtgtgaaggtgggagaatcacctggtgtctcgtactctcatatcgct
gctaaagcttatgaatgtggacgcaccgaactcgccatcaagctcctggactttgagcct
cggtctggagaacaggttcctctgctgctgaagatgaagaggagtcatctggctctcaat
aaggctgtagaaagtggagacacagacctggtctacatggtggtcacacacctgaagaat
gaaatgaacagaggggatttcttcatgacgctgaggaaccagccggtggccctcagcctc
tacagacaattctgtaagcttcaggagcaagagacgctgaaggacctctataaccaggat
gacaaccatcaggagctggccaactactacgtcactgtgtcttacagagaaaagaggttg
gagagccgtctctctcagctgcagaacgctgtagacgagtacaacaaggccaaaaacgac
tttgctgcaaaggccacagaggaggagatgcgtctccttcgtttccagcgaaagctggat
gatgagaaaggggcggggcttcttggactatccctgcaggtaaccatggagacactgctg
tcgttaggacttcacaaacaggcagagcagttgtacagagactttaaagttcctgacaaa
aggtattggtggctaaagctcaagtctctggcagagaaggaggagtgggaggagctagag
aaattttccaagagtaaaaaatctccaattggttacctggcatttgttgagacttgcatc
aagtataacaacaggtatgaggccaagaagtacatctccaaagtgacgcctgagcaaaaa
gtcaaggctcacctggctgtgggagacctggaaggggcagcagaagctgccattgagcat
aagagtgaatcagagattgctttggtcctgtccagatgctccacctccaaccgcctgctg
attgacagactgaaccaggcgagtggcgccaaaaagtga
DBGET
integrated database retrieval system
