Oryzias melastigma (Indian medaka): 112142217
Help
Entry
112142217 CDS
T07439
Name
(RefSeq) putative ATP-dependent RNA helicase Pl10
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
112142217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112142217
03041 Spliceosome [BR:
oml03041
]
112142217
03036 Chromosome and associated proteins [BR:
oml03036
]
112142217
Enzymes [BR:
oml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112142217
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
112142217
mRNA cycle factors
Common to processing body (P body) and stress granule
112142217
Spliceosome [BR:
oml03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
112142217
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
112142217
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
112142217
NCBI-ProteinID:
XP_024121238
LinkDB
All DBs
Position
Unknown
AA seq
731 aa
AA seq
DB search
MSHVAVENAHALEQQLAVLDLSAPDGQGGGTNRRYIPPHLRNKDASKNVGNAFAAGRVGG
YTIAPTAGYGWDGGRSGFVNGYHDNRIGGNTFTRGPPRMERGRGGVGGYRGNRGGAFNPM
NPAQPMGFDAGGWTATKDAYGSFSSNRGKSAFFNDRGNANRGRYEHGGFGAGGAGNSRWV
EESREDGDWSKPTQRNERLEHELFSGSNTGINFEKYDDIPVEATGQNCPHHIESFQDVDM
GEIIMGNIALSRYTRPTPVQKYAIPIIKSKRDLMACAQTGSGKTAAFLLPILSQIYTDGP
GEALNAAKASGTDNGKYGRRKQYPIALVLAPTRELALQIYDVPVQFSYRSRVRPCVVYGG
ADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLILDEADRMLDMGFEPQIRR
IVEQDTMPHKGIRQTLMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVVWVE
ESDKRSFLLDLLSATVIPSEVQDGSGDGVEKPGKDSLTLVFVETKKGADALEDFLYREGY
ACTSIHGDRSQRDREEALNQFRSGKCPILVATAVAARGLDISNVKHVINFDLPSDIEEYV
HRIGRTGRVGNLGLATSFFNDKNGNITKDLLDILVEAKQEVPSWLESLAYEHQHKSTNRG
RSKRFTGGFGARDYRQTTAGGGAGGFGGRGGRNQGGHVGNRGFGGGGFGNFYTSDGYGGN
YSHSQVDWWGS
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccgtcgaaaacgcccacgcgctggagcagcagctcgccgtcttggac
ttgagcgccccggatggacaaggtggaggtactaacagacgatatattcctccacatctg
aggaacaaagatgcgtccaagaacgtaggaaacgcctttgctgccgggcgagtgggcggc
tacaccatcgcgcccacggccggatatgggtgggacggaggccgcagcggcttcgtcaac
ggttaccacgacaaccgcataggtggaaacaccttcacccgcggcccgcctcgcatggag
cgagggcgaggtggagtgggtggttatcgcggcaacaggggcggagccttcaaccccatg
aacccggcacagcccatgggctttgatgcaggaggctggaccgccaccaaggacgcctac
ggcagcttcagcagcaacagggggaagtccgccttcttcaacgacagaggaaacgccaac
agaggaaggtatgaacacggcggattcggggcggggggggcaggaaacagccgctgggtg
gaggagtccagagaggacggagactggtccaaacccacgcagaggaacgaacgtctggaa
cacgagttgttttctggcagcaacacggggatcaactttgagaaatatgatgacattccg
gtggaggcgacggggcagaactgcccccaccacatcgagagctttcaggatgtggacatg
ggggagatcatcatgggcaacatcgctctgagccgctacaccagacccaccccggtccag
aaatacgccattcccatcatcaagtccaagagggacctgatggcctgcgcccagacaggc
tcggggaagaccgcggccttcctgctgccgatcctcagccagatctacacggacggaccg
ggagaagctctgaacgccgccaaagcctcaggaacggacaacgggaagtacggccggcgt
aagcagtaccccatcgcgctggttctggcccccaccagggagctggccctgcagatctac
gatgtcccggtccagttctcgtaccggtccagggtgcggccctgcgtggtttacggagga
gccgacatcggccagcagatccgggacctggagagaggctgccacctgctggtggccaca
ccgggaagactagtggacatgatggagaggggcaagatcggcctggactactgcaactac
ctcatcctggacgaggcggaccgcatgctggacatgggattcgaaccgcagatccgccgc
atcgtggagcaggacaccatgccgcacaagggcatcagacagactctgatgttcagcgct
accttccccaaagagatccagatcctggcgagggacttcctggaggactacatcttcctg
gcggtgggcagagtgggctccacctctgaaaacatcacccagaaggtggtgtgggtggag
gagagcgacaagaggtccttcctgctggacctgctgagcgccacagtcatccccagtgaa
gtgcaggacggttctggagacggcgtggagaagcccgggaaagactcgctgactctggtg
tttgtggagaccaagaagggagcagacgccttggaggacttcctgtatcgggagggctac
gcctgcaccagtatccatggtgaccgctcccagcgggaccgggaggaggccctgaaccag
ttccgatcggggaaatgtcccatcctggtggcgacggcggtggctgctcgcggtctggac
atctccaacgtcaaacacgtcatcaactttgacctgcccagcgacatcgaggagtatgtc
caccgcatcgggcgcacgggacgcgtggggaacctgggtctggccacgtcattcttcaac
gacaaaaacgggaacatcactaaagacctgctggacatcctggtggaggccaaacaggaa
gtcccctcgtggctggagagcctggcgtacgaacaccagcacaagagcaccaacaggggg
cgctctaagaggttcaccggaggcttcggagcgcgggactaccgccagacgacggccgga
ggcggagcggggggatttggcgggcgaggaggacgcaaccagggggggcacgtgggaaac
cgcgggtttggaggaggggggtttgggaacttctacaccagcgacggctacgggggaaac
tactcacactctcaagtggactggtggggcagctag
DBGET
integrated database retrieval system
