Oryzias melastigma (Indian medaka): 112142360
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Entry
112142360 CDS
T07439
Symbol
vps36
Name
(RefSeq) vacuolar protein-sorting-associated protein 36
KO
K12190
ESCRT-II complex subunit VPS36
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
112142360 (vps36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oml04131
]
112142360 (vps36)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oml04147
]
112142360 (vps36)
Membrane trafficking [BR:
oml04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-II complex
112142360 (vps36)
Exosome [BR:
oml04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112142360 (vps36)
Exosomal proteins of colorectal cancer cells
112142360 (vps36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAP30
Vps36_ESCRT-II
Xre-like-HTH
TssO
Motif
Other DBs
NCBI-GeneID:
112142360
NCBI-ProteinID:
XP_024121418
Ensembl:
ENSOMEG00000015833
UniProt:
A0A3B3C8Q5
LinkDB
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Position
LG14:15683081..15690598
Genome browser
AA seq
382 aa
AA seq
DB search
MDRFSWTNGLLEIDETLVITQRGVRLYDGDDKAKMEVGVVLLSTHRLIWRDTKNHECCIA
IPLSQIIFFEEQAGGIGKSAKTVIHLHPSPPNKEPGPYSQSKYSYIKLSFKEHGQIEFHR
RLTEEITKKRWENTPVSQPIPTGTGLQAGRTRAVGIVGIERKIEEKRKETDKNISEAFED
LSKLMVKAKEMVELSKSIANKIKEKQGDITEDETIRFKSYLLSMGIANPVTRETHGSGTH
YHMQLSKQLGDMLQAPLEERGGMMALTEVYCLVNRARGMELLSPEDLLNACKMFDSLKLP
LKLRVFDSGVMVVQLQSHSEEEMIASAMDNVADKGSLTAEEFAKLLGLSVLLSKERLLLA
EKMGHLCRDDSVEGLRFYPNLF
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atggacagattttcttggacaaacgggctcctggaaattgatgaaactttagtaattacg
caaagaggagtccggctgtatgacggtgatgacaaggcaaaaatggaagttggagttgtc
ctgttgagcacacaccggttgatctggagggacaccaagaaccacgaatgttgcatagcc
attcctctgtctcagatcatcttctttgaggagcaggctggaggaataggaaagagtgca
aaaacagttatccatctgcacccttcacctcccaacaaggagccgggaccctattcgcaa
agtaaatactcatatataaaactttcctttaaggaacatggacagattgagtttcacaga
agactaacagaagaaatcaccaagaaaagatgggagaatacacctgtttcacagcccatt
cctacaggaactggacttcaggcaggaaggacgcgtgcagtgggtatcgttgggattgag
cgtaagatcgaggagaaaagaaaagaaacggacaaaaacatttccgaggcctttgaagac
ctcagtaagctgatggtaaaggccaaagaaatggtggagctgtccaaatctattgccaac
aagatcaaagaaaagcaaggagacataacagaggatgaaaccatacgctttaaatcctac
ctcttgagcatgggcatcgcaaacccggttaccagggaaactcacggttcgggcacacac
tatcatatgcagcttagcaaacaactgggagatatgctccaggctcctttagaggagcgc
ggcggaatgatggctctcactgaggtgtactgtctcgttaaccgagcacgagggatggag
cttttatccccagaagatttgctaaatgcctgcaaaatgttcgactccctgaagctccct
ctgaagttgcgagtgtttgacagtggtgtgatggtggtccagctgcagtctcacagtgaa
gaggaaatgattgcctcagctatggataatgttgctgataaaggctcattgacggctgag
gagtttgcaaaactcttgggtctctctgtgcttctatccaaagaacggttgctgcttgct
gaaaagatgggccatctgtgtagagatgactctgttgaaggactgagattctacccaaac
ctgttttga
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