Oryzias melastigma (Indian medaka): 112142361
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Entry
112142361 CDS
T07439
Name
(RefSeq) thrombospondin type-1 domain-containing protein 1
KO
K24433
thrombospondin type-1 domain-containing protein 1
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
oml04990
]
112142361
Domain-containing proteins not elsewhere classified [BR:
oml04990
]
Thrombospondin domain-containing proteins
Other thrombospondin domain-containing proteins
112142361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
THSD1_D3
THSD1_N
THSD1_D2
TSP1_spondin
TSP_1
TSP1_ADAMTS
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
112142361
NCBI-ProteinID:
XP_024121419
Ensembl:
ENSOMEG00000015725
UniProt:
A0A3B3CAB9
LinkDB
All DBs
Position
LG14:15691504..15699678
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AA seq
939 aa
AA seq
DB search
MPQAVSALPFLLTLLGYAFARLSIWPSFHVALSNGSVFVDFRAKNSSSIVSNLSLSLVDM
GTNTTLLIRTLPSNQPVSKVEFNCSCFLYAGTFRFLLRQTSITPALNTNGTDGTSLESLT
WWWSSELQVQWPTFHIAVDRAANHSDSFQVGIFMNEHFPACSSSIKDVLLLEVTYMEYNQ
IGRNSIDKIRARVQRPIKAIRSQSVEFSCAFPFTEKDFIRVTVRSPHTTQEVKSLEPLYL
SRIFSYKLLVENANAYKTGCVGTMTVKMITPPCAHISGKVVLYSDAAVKRGIAVSSAATG
PGPEEPTSPPLAFNWLTQGENETEFNCSVFYPGKNKYCFRFVFNFSRSPSPAQTCLVVYR
SAEQWGPWQPWSTCSASCGEAVRERVRECLLPSGVQGLQCSGMIKEQSLCSLEDCAVSPS
PSPSPRPVPVGVTSLGGNMIVILGISLCLSVIMATVVVTVWRRFCQTPQCSSVRRGSIHS
PGGRKLSDEASICGHSLQRPSLSDCPGSSGGVAVPADTHYRGNQPLSQSLVLPPDPERLS
PTGQKVLPSVFGYKLAQQQLKEMKRKGLKEATQLYHVSSSPVHDTAVEKSPSSSAVLSHG
EFAQSASPLSLQDNDDHVCVATPLSKLPAQPSRITPDRLSPKVMLVPGPPVSARTSRGNS
KWHDRTADWVEMVGRSAPMGLMGGGDADGAKNPNFRRTSSFSDTKFYATSAAQSRQFRER
SMTQVGFRTLPEGSCWSKGGWERQPHRPYPIPENGVSEWTRANTHRSDQKKLWLHSAASS
HNPERKNTGTNTNSFPASESVDFSGTVERKKGGEPVGGSRDSGIGGPATKPTRSHGTNDL
SIDQVERAEQNWNRRGPSPIQRNILARKLKEAQSCSGAKGCKRSSSFSVSSSEQRRDRCR
SLPISEDHGSSGGSPYRLSEAEQRMLDLDLSPVFVQEEE
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgccacaggctgtttcagcgctgcccttccttttgacactgctgggatatgcttttgca
aggctcagtatctggccatcattccatgttgcccttagcaacggcagcgtatttgtggac
ttcagagcaaaaaacagcagcagcatcgtaagtaacttgagtctttctcttgtcgacatg
ggaacaaacacaacccttctgatcaggactcttcccagcaaccaaccggtcagtaaggtg
gagttcaattgttcctgcttcctgtatgcgggaactttccggttcctgctgaggcagacc
tccatcacccctgctttaaataccaatggaacggatggcactagcctagagagcctcacc
tggtggtggagttcagaattgcaggttcagtggcctacctttcatattgctgtggataga
gcagcaaaccactctgactcttttcaggttggaatattcatgaatgaacactttccggct
tgctccagctcgatcaaggacgttctcctcttagaagtcacgtacatggagtacaaccag
ataggacgcaacagcatcgacaagattcgggcacgcgtgcagcgcccaatcaaagccatc
cgttcccaaagcgtcgagttttcctgcgctttccccttcacagagaaggacttcattaga
gtgactgtgcgatcacctcacacaacgcaggaagtgaaaagcctcgaacctctctacctg
tcccgtatattctcctataagctgctggtggagaacgccaacgcatacaagactggctgt
gtggggaccatgacggttaaaatgataaccccaccatgtgctcacatcagcgggaaggtc
gtgctgtacagcgatgcagctgttaaaaggggaattgctgtttcttctgcagcgacgggg
ccgggaccagaggaaccgacttctcctcctctggctttcaactggctgactcaaggagag
aacgagacagaattcaactgctccgtgttctacccgggaaagaataagtactgctttcgc
ttcgtcttcaacttcagtcgctccccgagtccagcacagacttgtctggtggtttatagg
agtgcagaacaatggggaccttggcaaccatggagcacgtgcagtgcgagctgtggggaa
gcggtgagggaacgggttcgtgagtgtttgcttccctcgggtgtgcagggactgcagtgc
agtggaatgataaaggagcaatccctgtgttcattggaggactgtgctgtgtccccttct
ccgtctccttccccccgcccggtgccagttggagtcacatccctcggtggcaacatgata
gtgatcctcggcatttccctttgcttgtctgtcatcatggcgactgtggtggtgactgtg
tggaggaggttttgtcagaccccgcagtgcagctcagtgcgcagaggttccattcattcc
cctggcgggcgtaagttatcggacgaggcctccatctgtggccacagcctccaaagaccc
agcctgtcagattgtcccggctcctcggggggcgtggccgttccagcagacacgcactac
cgtggaaatcagcctctgtcgcagtcactggtgctgccaccagacccagaaaggctttct
ccaacaggtcagaaggtgttgccatcagtgtttgggtacaaactggctcagcaacaattg
aaagaaatgaagaggaaggggttaaaagaagccacgcagctctaccatgtctcttcaagc
ccagttcatgacaccgcggtggaaaagtctcccagcagctccgccgttctctcacatggc
gagtttgctcagtccgcctcacctctgagtctgcaggataacgacgaccacgtttgcgtc
gcgaccccactgtccaagcttccagcgcagccttcaaggatcacacctgacaggctgagc
ccgaaggtgatgctggtcccaggccctccggtttctgctcgcaccagcagagggaactcc
aagtggcatgaccgcacagctgactgggtggagatggtgggaaggagtgctccgatgggc
ctcatgggaggaggagatgcagacggcgccaagaatccgaacttcaggcggacgtccagt
ttcagtgacaccaaattctatgcaacatctgcagctcagtccagacagtttagagaaagg
agcatgactcaggtgggatttcggactctcccagaaggaagttgttggagcaaaggagga
tgggaaagacaacctcaccgcccctaccctatcccagagaatggagtttcagagtggact
agagccaatacacacagaagtgaccagaagaagctctggcttcactcagctgcttcttct
cacaatccggagcgcaaaaacacaggaacaaacacaaacagtttcccagcttctgagagc
gtagactttagtggcacagtggagagaaaaaagggtggtgagccagtagggggcagcaga
gactcaggaatcgggggtccggctacaaagcccacccggtctcacggaaccaacgatctg
agtatagatcaggttgagcgggcggagcagaactggaaccggcgcggcccatctcctatt
cagaggaacatcttagcgaggaagttgaaggaagctcagtcctgctccggagccaaagga
tgcaagcggagctcaagttttagcgtgtcttcctcggagcagaggagggaccgctgccgc
tcgctgcccatctccgaggaccacggcagcagtggtggctccccctacaggctgagtgag
gcagaacagagaatgctggacttggatttgtctcctgtgttcgtgcaggaagaggagtag
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