Oryzias melastigma (Indian medaka): 112142371
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Entry
112142371 CDS
T07439
Name
(RefSeq) E3 ubiquitin-protein ligase RNF43
KO
K15694
E3 ubiquitin-protein ligase RNF43 [EC:
2.3.2.27
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
112142371
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oml04121
]
112142371
Enzymes [BR:
oml01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112142371
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112142371
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZNRF_3_ecto
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-RING_5
ASFV_J13L
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
112142371
NCBI-ProteinID:
XP_024121445
Ensembl:
ENSOMEG00000009139
LinkDB
All DBs
Position
LG14:complement(3980936..4076605)
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AA seq
816 aa
AA seq
DB search
MTVPPRRLAGLWPWLLMAALQVVLGQPGLESEHPLLRALIKVTLLKHEATGKPIVVEGLF
VGGSAGKAEGRLMQYHPLSLCNTSEDERQDGDFITIVKLEHRVPRCLPLLDKARMALDKG
AQAVIFDVSDDANAAAELREANSFPRPVVLVEAQGAEDLMGLVNKNEEANVVIEIKVEPK
WLHYDVSILLTIILVIFTIVLIFVFRYKCKSNRTWDSVHQQTVQAINRLETKTYSTQNCS
GSQRHRGAWGSASSSNSSPVCAICLEEFQDGQHLRIISCAHEFHKDCVDPWLLQHRTCPL
CMHNIMGTERQAQRNRTQQNSEQSQGFLHSQPYSNPPHHPFPQHAIPFSMRPLYPRGLSG
PYPNLGHYSGSSPMDTQTLHFLSSRQLGAGCGYHHPAEVPGRPHRTGGSCRTPTHHYTPR
RSCHNYRSFCPAQRSVSSSRLQHTVSVAPQSRGAAARSRQDEASCSGGSYHTDRSGYFPD
GPASDSSSGPCHGSSSDSVLNCTDVSLQGVYGSWSTFRSSLSSDYDPFVYYGPGAGRVPN
TNSPEVSSQVRPRSLDSVMNKAGSPEEQPQTVSIHYHRHRHHHYEEGEHSQGPNRGSDEE
QGAGAAAAAPLSALIRDKDSPVCVPKHSSCHCLKPDPTGGLSSGTEYQDHDPNCPTVPPV
LVSPIPLQLQSHCCHQSHGHLHAPQGRVGGCLLDGPSVHFHQSLDLQDDRNIHIHYGEGP
SFCCSPPELHPALLPVPLILDSGGMEDWPCCAGTHVVWQKQVQQAHSEPQLVGAGISMDR
TPCRFHQGPAGDRSTDFCSYCQSLHSNQGSEEESGV
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtccccccgcggcgcctggccgggctctggccgtggctgctcatggcggccctg
caggtggtgctgggccagccgggcctggagtccgagcacccgctgctccgcgcgctcatc
aaggtgactctgctgaagcacgaggccacggggaagcccatcgtcgtggagggactattc
gtgggaggaagcgccgggaaagcggagggcagactgatgcagtatcaccctctgtctctg
tgcaacacaagcgaggatgaacggcaagacggagacttcatcaccatcgtcaagctggag
cacagggtgccccgctgcctgccgctgctcgacaaggcccgcatggcactggataaagga
gctcaggccgtaatctttgatgtcagcgatgacgccaacgccgccgccgagctgcgggaa
gcaaactcctttccccgtccggtggtgctggtggaggctcagggtgctgaggacctgatg
ggtttggtcaacaagaacgaggaggccaatgttgttattgagatcaaagtggagcctaag
tggctacattatgacgtgagcatcctgctcacaatcatcctggtcattttcaccatcgtc
ctgatctttgttttccgctacaagtgcaagtccaacagaacctgggattctgtccaccag
cagacagtgcaggctatcaaccggctggagacaaaaacctacagcacccagaactgttcg
gggtcacagcgccaccggggggcctggggctcggccagcagctccaactccagcccggtc
tgtgctatctgcctggaggagttccaggatggacagcatcttaggatcatctcctgtgct
cacgagttccataaggactgcgtggacccctggctgctgcagcaccggacatgccccctc
tgcatgcacaacatcatgggaacggagcgccaggctcagaggaacagaacccagcagaac
tcagagcaaagccagggcttcctgcactctcagccttacagtaaccctccgcaccacccc
tttccccaacatgccatccccttctccatgaggcccctctacccccgcgggctttctgga
ccatatcctaatctgggccactacagcggctcttctcctatggacactcagactctacat
ttcctcagcagcaggcagctgggtgcaggctgtggataccaccaccccgcagaggttcct
gggaggccccacagaaccggaggcagctgcaggacccccacacaccactacacccctcgg
cggtcctgccacaactaccgttccttctgtccagctcaacgcagtgtatcaagctccaga
ctgcaacacaccgtctctgtcgcacctcagagcagaggggcagcggcccgcagccggcag
gacgaggccagctgctcagggggcagctatcacacagaccggagtggttactttccagat
gggccagccagtgactccagctcagggccctgccacggctcttccagcgactcggttctg
aactgtacagacgtctcgctgcagggagtttatgggagctggtccaccttccggagctcc
ctgagtagtgactatgatccgtttgtgtattacgggccgggtgctgggcgggttccaaac
acaaatagcccagaggtgagttcccaggtccggcccaggtctctggattctgtgatgaac
aaagcgggctctcctgaagagcagccacagactgtttccatccactaccaccggcaccga
caccaccactacgaggagggggaacacagccagggcccgaacagaggctccgatgaggag
cagggggcgggcgctgccgctgcagctcctctctctgctctcatcagggacaaagactcg
cctgtgtgtgtcccaaagcacagctcatgccactgcctcaaaccagaccccactggtggg
cttagttctgggactgaatatcaggaccacgaccccaactgccccacggtacctcctgtc
cttgtatccccgatccccttacagctgcagtcccactgctgccaccagagtcacggacac
ctccatgctcctcaggggcgagtggggggctgtctgctggacggcccctctgtccacttc
caccagagcttagatctgcaggacgaccgcaacatccacatccactacggcgagggccca
agcttctgctgctcccctcctgagctccaccctgccctgctcccggttcctctcattcta
gactctggaggaatggaggactggccgtgttgtgccggaacgcatgttgtgtggcagaaa
caggtgcagcaggcccactcagagcctcagcttgtgggggctgggatctcgatggacaga
acgccatgcaggttccaccaggggccggctggtgaccgcagcacagacttttgttcatac
tgccaatcattacacagcaatcagggatcagaggaggagtctggggtgtag
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